MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-20b
Paralogues Rno-Mir-17-P1a  Rno-Mir-17-P1c  Rno-Mir-17-P1d  Rno-Mir-17-P2a  Rno-Mir-17-P2c  Rno-Mir-17-P4a  Rno-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chrX: 140117522-140117582 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAAGGACAAGCUCCGAUCCUAGUAGUGCCAAAGUGCUCAUAGUGCAGGUAGGUUUUGCUGCACUCUACUGCAGUGUGAGCACUUCUGGUACUCUUCGAAUCAACCAAACCCUCGUUGAC
Get precursor sequence
Structure
        10           20        30         40        50          
UACAAGGACAAGCUCCGA---| CU  U       -           G     G   GUUUUG 
                     UC  AG AGUGCCA AAGUGCUCAUA UGCAG UAG      \
                     AG  UC UCAUGGU UUCACGAGUGU ACGUC AUC      C
CAGUUGCUCCCAAACCAACUA^ CU  -       C           G     -   UCACGU 
 .       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
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Mature sequence

Rno-Mir-17-P4c_5p

mirBase accessionMIMAT0003211
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0003211
TargetScanVert: rno-miR-20b-5p
miRDB: MIMAT0003211
Star sequence

Rno-Mir-17-P4c_3p*

mirBase accessionMIMAT0003212
Sequence
38- ACUGCAGUGUGAGCACUUCUGGU -61
Get sequence
Proposed targets microrna.org: MIMAT0003212
TargetScanVert: rno-miR-20b-3p
miRDB: MIMAT0003212