Mir-17-P4c

MirGeneDB ID

Mdo-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-20b

Paralogues

Mdo-Mir-17-P1a Mdo-Mir-17-P1c Mdo-Mir-17-P2a Mdo-Mir-17-P2c Mdo-Mir-17-P4a Mdo-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

X: 35202543-35202603 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c X: 35202093-35202159 [-] UCSC Ensembl
Mir-92-P1c X: 35202231-35202295 [-] UCSC Ensembl
Mir-19-P2c X: 35202389-35202447 [-] UCSC Ensembl
Mir-17-P4c X: 35202543-35202603 [-] UCSC Ensembl
Mir-17-P2c X: 35202855-35202919 [-] UCSC Ensembl
Mir-17-P1c X: 35203052-35203108 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGAGGCUGGUCCCAGGUCCUGGUAGUGCCAAAGUGCUCAUAGUGCAGGUAGUUUUUUGCAAAUGACUACUGUACUAUGGGCACUUCAGCGCUCCUGGGUAAUGUAUCACUGGGGGGUGG

Get precursor sequence

Structure

        10          20        30        40        50        60
GUGGAGGCUGGUCCCAGGU--| UG U     CA                 G   UUUUUU 
                     CC  G AGUGC  AAGUGCUCAUAGUGCAG UAG      G
                     GG  C UCGCG  UUCACGGGUAUCAUGUC AUC      C
GGUGGGGGGUCACUAUGUAAU^ GU C     AC                 -   AGUAAA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +2 on the 3p arm.

3' NTU

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-17-P4c_5p

mirBase accession

MIMAT0028764

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-20b-5p

Star sequence

Mdo-Mir-17-P4c_3p*

mirBase accession

MIMAT0028765

Sequence

39- ACUGUACUAUGGGCACUUCAGC -61

Get sequence

Proposed targets

TargetScanVert: mdo-miR-20b-3p