MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-106
Paralogues Mdo-Mir-17-P1a  Mdo-Mir-17-P2a  Mdo-Mir-17-P2c  Mdo-Mir-17-P4a  Mdo-Mir-17-P4c  Mdo-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
X: 35203052-35203108 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)
Mir-92-P2c X: 35202093-35202159 [-] UCSC Ensembl
Mir-92-P1c X: 35202231-35202295 [-] UCSC Ensembl
Mir-19-P2c X: 35202389-35202447 [-] UCSC Ensembl
Mir-17-P4c X: 35202543-35202603 [-] UCSC Ensembl
Mir-17-P2c X: 35202855-35202919 [-] UCSC Ensembl
Mir-17-P1c X: 35203052-35203108 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUUGCUGGAGGCCGUGCCUCGGUUGUGUAAAAGUGCUUAUAGUGCAGGUAGGUCGUGUAACUACUGCCCUGUGAGCACUUCCAACAUGACCACGGCAAUGGAUGAUGUGGGGCUU
Get precursor sequence
Structure
        10          20        30         40        50        
GCUUUGCUGGAGGCCGU--   UC   UG   AA-|           U    G   GUCG 
                   GCC  GGU  UGU   AAGUGCUUAUAG GCAG UAG    \
                   CGG  CCA  ACA   UUCACGAGUGUC CGUC AUC    U
UUCGGGGUGUAGUAGGUAA   CA   GU   ACC^           C    -   AAUG 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-17-P1c_5p

mirBase accessionMIMAT0012742
Sequence
0- AAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-106-5p
Star sequence

Mdo-Mir-17-P1c_3p* (predicted)

mirBase accessionMIMAT0026934
Sequence
34- ACUGCCCUGUGAGCACUUCCAAC -57
Get sequence
Proposed targets TargetScanVert: mdo-miR-106-3p