MirGeneDB 2.1
MirGeneDB ID

Pbv-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-106
Paralogues Pbv-Mir-17-P1a  Pbv-Mir-17-P2a  Pbv-Mir-17-P2c  Pbv-Mir-17-P4a  Pbv-Mir-17-P4c 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE958055.1: 3752-3809 [-]
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c KE958055.1: 115-179 [-]
Mir-92-P1c KE958055.1: 286-347 [-]
Mir-17-P4c KE958055.1: 600-662 [-]
Mir-17-P2c KE958055.1: 3575-3639 [-]
Mir-17-P1c KE958055.1: 3752-3809 [-]
Precursor
(pre-Mir +30nt flank)
UCCGGAGUUUGGGGAAGCCAUCGGUGGUGCAAAAGUGCUUAUAGUGCAGGUAGUCCAGUGAUCUCUACUGCAGUGUUAGCACUUCAGUGGCACAAUGGCACGGUGGCGCAGGAUGGGC
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Structure
        10           20        30        40        50         
UCCGGAGUUUGGGGAAG---|   CG   G   AA       U   G     G   UCCAG 
                    CCAU  GUG UGC  AAGUGCU AUA UGCAG UAG     \
                    GGUA  CAC GUG  UUCACGA UGU ACGUC AUC     U
CGGGUAGGACGCGGUGGCAC^   A-   G   AC       U   G     -   UCUAG 
      110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Pbv-Mir-17-P1c_5p
mirBase accessionMIMAT0038905
Sequence 
0- AAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
Star sequence

Pbv-Mir-17-P1c_3p*
mirBase accessionMIMAT0038906
Sequence 
36- ACUGCAGUGUUAGCACUUCAGU -58
Get sequence