Mir-17-P1c

MirGeneDB ID

Sha-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-17-P1a Sha-Mir-17-P2a Sha-Mir-17-P2c Sha-Mir-17-P4a Sha-Mir-17-P4c Sha-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL867596.1: 71642-71699 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUCUGCUGGAGACCGAGCCUUGGUUGUGUAAAAGUGCUUAUAGUGCAGGUAGGUCGGUGUAACUACUGCCCUGUGAGCACUUCCAACAUGACCACGGCAAUGGAUGAUUUGGGGCUU

Get precursor sequence

Structure

        10          20        30         40        50        
GUUCUGCUGGAGACCGA--   U    UG   AA-|           U    G   GUCG 
                   GCC UGGU  UGU   AAGUGCUUAUAG GCAG UAG    G
                   CGG ACCA  ACA   UUCACGAGUGUC CGUC AUC    U
UUCGGGGUUUAGUAGGUAA   C    GU   ACC^           C    -   AAUG 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-17-P1c_5p

mirBase accession

None

Sequence

0- AAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Sha-Mir-17-P1c_3p*

mirBase accession

None

Sequence

35- ACUGCCCUGUGAGCACUUCCAAC -58

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