Mir-17-P1c

MirGeneDB ID

Mml-Mir-17-P1c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-106a

Paralogues

Mml-Mir-17-P1a Mml-Mir-17-P1d Mml-Mir-17-P2a Mml-Mir-17-P2c Mml-Mir-17-P4a Mml-Mir-17-P4c Mml-Mir-17-P4d

Orthologues

Aca-Mir-17-P1c Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 130425897-130425955 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-92-P2c CM014356.1: 130425071-130425135 [-] UCSC Ensembl
Mir-92-P1c CM014356.1: 130425233-130425293 [-] UCSC Ensembl
Mir-19-P2c CM014356.1: 130425372-130425437 [-] UCSC Ensembl
Mir-17-P4c CM014356.1: 130425501-130425561 [-] UCSC Ensembl
Mir-17-P2c CM014356.1: 130425731-130425795 [-] UCSC Ensembl
Mir-17-P1c CM014356.1: 130425897-130425955 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUUGCUACAGGAAUAGGCCUUGGCCAUGUAAAAGUGCUUACAGUGCAGGUAGCUUUUUGAGAUCUACUGCAAUGCAAGCACUUCUUACAUUACCAUGGUGAUUUAAUCAAUGGCUACU

Get precursor sequence

Structure

        10          20        30         40        50         
UCUUGCUACAGGAAUAG--   U   CC      -|       A  G     G   CUUUU 
                   GCC UGG  AUGUAA AAGUGCUU CA UGCAG UAG     \
                   UGG ACC  UACAUU UUCACGAA GU ACGUC AUC     U
UCAUCGGUAACUAAUUUAG   U   AU      C^       C  A     -   UAGAG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Unknown

Motifs

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-17-P1c_5p

mirBase accession

MIMAT0002798

Sequence

0- AAAAGUGCUUACAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-106a-5p

Star sequence

Mml-Mir-17-P1c_3p* (predicted)

mirBase accession

MIMAT0026604

Sequence

36- ACUGCAAUGCAAGCACUUCUUAC -59

Get sequence

Proposed targets

TargetScanVert: mml-miR-106a-3p