MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-106
Paralogues Xtr-Mir-17-P1a  Xtr-Mir-17-P2a  Xtr-Mir-17-P2c  Xtr-Mir-17-P4a  Xtr-Mir-17-P4c  Xtr-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr8: 47198222-47198278 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)
Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAGGAGCUGUGACCUGCCUGCGUUGUGCAAAAGUGCUUAUAGUGCAGGUAGAAUUUAAACCUACUGCACCAUAAGCACUUCCUGCAUCACUAAGGUGCAUAAAUCUGCCCCUGCU
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Structure
        10          20        30         40        50        
CAUAGGAGCUGUGACCU--    GC  U     A-|         A      G   AAUU 
                   GCCU  GU GUGCA  AAGUGCUUAU GUGCAG UAG    \
                   UGGA  CA UACGU  UUCACGAAUA CACGUC AUC    U
UCGUCCCCGUCUAAAUACG    AU  C     CC^         C      -   CAAA 
     110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-17-P1c_5p

mirBase accessionMIMAT0003583
Sequence
0- AAAAGUGCUUAUAGUGCAGGUAG -23
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Proposed targets TargetScanVert: xtr-miR-106
Star sequence

Xtr-Mir-17-P1c_3p* (predicted)

mirBase accessionNone
Sequence
34- ACUGCACCAUAAGCACUUCCUGC -57
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