MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-19b-1
Paralogues Xtr-Mir-19-P1a  Xtr-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr8: 47197828-47197884 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c chr8: 47197567-47197631 [-] UCSC Ensembl
Mir-92-P1c chr8: 47197697-47197755 [-] UCSC Ensembl
Mir-19-P2c chr8: 47197828-47197884 [-] UCSC Ensembl
Mir-17-P4c chr8: 47197940-47198000 [-] UCSC Ensembl
Mir-17-P2c chr8: 47198097-47198161 [-] UCSC Ensembl
Mir-17-P1c chr8: 47198222-47198278 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUGGUGACUAUAGAUACCUGCUCCUGUCAGUUUAGCUGGUUUGCAUCAGCUGACUAUUGUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCUGGGAAGGCUCUCUGGAAUUGCU
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Structure
        10          20        30         40         50       
GCUUGGUGACUAUAGAUA--  U   CCU        A  -   -|     U    UGAC 
                    CC GCU   GUCAGUUU GC UGG UUUGCA CAGC    U
                    GG CGG   CAGUCAAA CG ACC AAACGU GUCG    A
UCGUUAAGGUCUCUCGGAAG  U   UGU        A  U   U^     -    UGUU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-19-P2c_5p*

mirBase accessionNone
Sequence
0- AGUUUAGCUGGUUUGCAUCAGC -22
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Mature sequence

Xtr-Mir-19-P2c_3p

mirBase accessionMIMAT0003567
Sequence
34- UGUGCAAAUCCAUGCAAAACUGA -57
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Proposed targets TargetScanVert: xtr-miR-19b