MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-19-P1a  Cja-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Eca-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 125646648-125646713 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUAUUCAAAGACAUUGCUACUUACAAUUAGUUUUGCAGGUUUGCAUUUCAGCGUAUACAUGUAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUAAUGUGUUACUUCCUACGUCUGU
Get precursor sequence
Structure
        10        20          30         40         50        60   
GAAUAUUCAAAGACAUUGCUAC--                 -  -|     UUU    GUAUACAU 
                        UUACAAUUAGUUUUGCA GG UUUGCA   CAGC        \
                        AGUGUUAGUCAAAACGU CC AAACGU   GUCG        G
UGUCUGCAUCCUUCAUUGUGUAAU                 A  U^     ---    GUAUAUAU 
    120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-19-P2c_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUUUUGCAGGUUUGCAUUUCAGC -24
Get sequence
Mature sequence

Cja-Mir-19-P2c_3p
mirBase accessionNone
Sequence 
43- UGUGCAAAUCCAUGCAAAACUGA -66
Get sequence