Mir-19-P2c

MirGeneDB ID

Mun-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Mir-19-P1a Mun-Mir-19-P2a Mun-Mir-19-P2d

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

19-P2c_LR594638.1:44966741-44966999: 101-159 [+]

Precursor
(pre-Mir +30nt flank)

CUUAAAAAUUUGGAAGCAGUGUGUACGGUCAGUUUUGCUGGUUUGCAUUCAGCUUGAUUUAGUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGCCUGGUUCGGUGAGCUGAA

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Structure

        10           20        30         40         50         
CUUAAAAAUUUGGAAGC--- G   G               -   -|     UU    UUGAU 
                    A UGU UACGGUCAGUUUUGC UGG UUUGCA  CAGC     \
                    U ACG GUGUCAGUCAAAACG ACC AAACGU  GUCG     U
AAGUCGAGUGGCUUGGUCCG G   -               U   U^     --    UUGAU 
       110       100         90        80        70          60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Star sequence

Mun-Mir-19-P2c_5p*

mirBase accession

None

Sequence

0- AGUUUUGCUGGUUUGCAUUCAGC -23

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Mature sequence

Mun-Mir-19-P2c_3p

mirBase accession

None

Sequence

36- UGUGCAAAUCCAUGCAAAACUGA -59

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