MirGeneDB 2.1

MirGeneDB ID

Mun-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-19-P1a  Mun-Mir-19-P2a  Mun-Mir-19-P2d 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)
19-P2c_LR594638.1:44966741-44966999: 101-159 [+]
Precursor
(pre-Mir +30nt flank)
CUUAAAAAUUUGGAAGCAGUGUGUACGGUCAGUUUUGCUGGUUUGCAUUCAGCUUGAUUUAGUUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGCAGUGCCUGGUUCGGUGAGCUGAA
Get precursor sequence
Structure
        10           20        30         40         50         
CUUAAAAAUUUGGAAGC--- G   G               -   -|     UU    UUGAU 
                    A UGU UACGGUCAGUUUUGC UGG UUUGCA  CAGC     \
                    U ACG GUGUCAGUCAAAACG ACC AAACGU  GUCG     U
AAGUCGAGUGGCUUGGUCCG G   -               U   U^     --    UUGAU 
       110       100         90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Mun-Mir-19-P2c_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCUGGUUUGCAUUCAGC -23
Get sequence
Mature sequence

Mun-Mir-19-P2c_3p

mirBase accessionNone
Sequence
36- UGUGCAAAUCCAUGCAAAACUGA -59
Get sequence