MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-19b-2
Paralogues Rno-Mir-19-P1a  Rno-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chrX: 140117391-140117456 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACUGUGCGAGGACAUUGCUACUUACGGUUAGUUUUGCAGAUUUGCAGUUCAGCGUAUAUGUGGAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUGAUGUGUGCCUUUCUGCAUCUUU
Get precursor sequence
Structure
        10        20          30          40        50        60   
UACUGUGCGAGGACAUUGCUAC--                 --|       GUU    GUAUAUGU 
                        UUACGGUUAGUUUUGCA  GAUUUGCA   CAGC        \
                        AGUGUUAGUCAAAACGU  CUAAACGU   GUCG        G
UUUCUACGUCUUUCCGUGUGUAGU                 AC^       ---    GUAUAUAG 
    120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-19-P2c_5p*

mirBase accessionMIMAT0017097
Sequence
0- AGUUUUGCAGAUUUGCAGUUCAGC -24
Get sequence
Proposed targets TargetScanVert: rno-miR-19b-2-5p
miRDB: MIMAT0017097
Mature sequence

Rno-Mir-19-P2c_3p

mirBase accessionMIMAT0000788
Sequence
43- UGUGCAAAUCCAUGCAAAACUGA -66
Get sequence
Proposed targets microrna.org: MIMAT0000788
TargetScanVert: rno-miR-19b-3p
miRDB: MIMAT0000788