Mir-19-P2c

MirGeneDB ID

Sha-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-19-P1a Sha-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL867596.1: 71025-71083 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUAGCAUUAAUCCCAGUGCUACUCACAGUCAGUUUUGCAGGUCUUGCAUCGGCCUGUGUCAAUUGCUGUGCAAAUCCAUGCAAAACUGAUUAUGAGGGCGUUCGCAUCUGCAUUUUCUG

Get precursor sequence

Structure

        10           20        30         40        50         
CUAGCAUUAAUCCCAGU---|  A    C             -  UC     U    CUGUG 
                    GCU CUCA AGUCAGUUUUGCA GG  UUGCA CGGC     \
                    CGG GAGU UUAGUCAAAACGU CC  AACGU GUCG     U
GUCUUUUACGUCUACGCUUG^  -    A             A  UA     -    UUAAC 
       110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-19-P2c_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGUCUUGCAUCGGC -23

Get sequence

Mature sequence

Sha-Mir-19-P2c_3p

mirBase accession

None

Sequence

36- UGUGCAAAUCCAUGCAAAACUGA -59

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