Mir-19-P2c

MirGeneDB ID

Aca-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

Paralogues

Aca-Mir-19-P1a Aca-Mir-19-P2a

Orthologues

Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL344214.1: 24242-24302 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-17-P2c GL344214.1: 22479-22543 [+] UCSC Ensembl
Mir-17-P4c GL344214.1: 24042-24104 [+] UCSC Ensembl
Mir-92-P1c GL344214.1: 24446-24508 [+] UCSC Ensembl
Mir-92-P2c GL344214.1: 24606-24670 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAGACAGACCUUUGUGCUGAUCUACAGUCCGUUUUGCAGGUUUGCAUCCCAGCUUGCUGUCCGUCGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUAGUUGUGAGCGGUAAAGGAU

Get precursor sequence

Structure

        10         20         30         40         50        60
ACAGACAGACCUUUGUG-   AU-        C        -  -|     UCC    UUGCU 
                  CUG   CUACAGUC GUUUUGCA GG UUUGCA   CAGC     G
                  GAU   GGUGUCAG CAAAACGU CC AAACGU   GUCG     U
UAGGAAAUGGCGAGUGUU   GGU        U        A  U^     ---    CUGCC 
 .       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sk	Ta	Ta	To	Wh

Star sequence

Aca-Mir-19-P2c_5p*

mirBase accession

None

Sequence

0- CGUUUUGCAGGUUUGCAUCCCAGC -24

Get sequence

Mature sequence

Aca-Mir-19-P2c_3p

mirBase accession

None

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

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