MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Cod (Gadus morhua)
MiRBase ID
Paralogues Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Gmo-Mir-19-P2d 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Hsa-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold08698: 71942-72003 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c scaffold08698: 71694-71762 [-] UCSC Ensembl
Mir-17-P4c scaffold08698: 72088-72146 [-] UCSC Ensembl
Mir-17-P2c scaffold08698: 72457-72520 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGCGUCUUCCCCGGAUGGGUCGACAGGGAGUUUUGUUGGAUUGCGUUAGGCUGUUUUAUGACUUUGCUGUGCAAAUCCAUGCAAAACUCUCUGUUACCCAGACAUGCAACAACUACAUUU
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Structure
        10           20        30         40         50        60
UUGGCGUCUUCCCCGGA---     C               -    -|   GUUA   UGUUUU 
                    UGGGU GACAGGGAGUUUUGU UGGA UUGC    GGC      A
                    ACCCA UUGUCUCUCAAAACG ACCU AACG    UCG      U
UUUACAUCAACAACGUACAG     -               U    A^   UG--   UUUCAG 
120       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-19-P2c_5p*

mirBase accessionNone
Sequence
0- AGUUUUGUUGGAUUGCGUUAGGC -23
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Mature sequence

Gmo-Mir-19-P2c_3p

mirBase accessionNone
Sequence
39- UGUGCAAAUCCAUGCAAAACUCU -62
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