MirGeneDB ID | Pab-Mir-19-P2c |
---|---|
Family name | MIR-19 (all species) |
Seed | GUGCAAA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-19-P1a Pab-Mir-19-P2a |
Orthologues | Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140167071-140167136 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAAUAUUCAAAGACAUUGCUACUUACAAUUAGUUUUGCAGGUUUGCAUUUCAGCGUAUAUAUGUAUAUGUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUAAUGUGUGCUUCCUACAUCUGUGGet precursor sequence |
Structure | 10 20 30 40 50 60 GAAUAUUCAAAGACAUUGCUAC-- - -| UUU GUAUAUAU UUACAAUUAGUUUUGCA GG UUUGCA CAGC \ AGUGUUAGUCAAAACGU CC AAACGU GUCG G GUGUCUACAUCCUUCGUGUGUAAU A U^ --- GUGUAUAU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Pab-Mir-19-P2c_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUUUUGCAGGUUUGCAUUUCAGC -24
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|
Mature sequence | Pab-Mir-19-P2c_3p |
mirBase accession | None |
Sequence |
43- UGUGCAAAUCCAUGCAAAACUGA -66
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|