MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Cow (Bos taurus)
MiRBase ID bta-mir-19b-2
Paralogues Bta-Mir-19-P1a  Bta-Mir-19-P2a 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Cfa-Mir-19-P2c  Cja-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Eca-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Lch-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2c)
Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAACAUUCAAAGACACUGCUACUUACAGUUAGUUUUGCUGGUUUGCAUUUCAGCGUGUGGAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGAUACUGUGUUUCUUCUGCGGCCCUA
Get precursor sequence
Structure
        10        20          30         40         50        60 
GAACAUUCAAAGACACUGCUAC--                -   -|     UUU    GUGUGG 
                        UUACAGUUAGUUUUGC UGG UUUGCA   CAGC      \
                        AGUGUUAGUCAAAACG ACC AAACGU   GUCG      A
AUCCCGGCGUCUUCUUUGUGUCAU                U   U^     ---    GUAUAU 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-19-P2c_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCUGGUUUGCAUUUCAGC -24
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Mature sequence

Bta-Mir-19-P2c_3p

mirBase accessionMIMAT0004337
Sequence
39- UGUGCAAAUCCAUGCAAAACUGA -62
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Proposed targets TargetScanVert: bta-miR-19b