MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-19-P2c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-19-P1a  Lch-Mir-19-P2a  Lch-Mir-19-P2d 
Orthologues Aca-Mir-19-P2c  Ami-Mir-19-P2c  Bta-Mir-19-P2c  Cfa-Mir-19-P2c  Cja-Mir-19-P2c  Cli-Mir-19-P2c  Cmi-Mir-19-P2c  Cpi-Mir-19-P2c  Cpo-Mir-19-P2c  Dno-Mir-19-P2c  Dre-Mir-19-P2c  Eca-Mir-19-P2c  Ete-Mir-19-P2c  Gga-Mir-19-P2c  Gja-Mir-19-P2c  Gmo-Mir-19-P2c  Hsa-Mir-19-P2c  Laf-Mir-19-P2c  Mdo-Mir-19-P2c  Mml-Mir-19-P2c  Mmr-Mir-19-P2c  Mmu-Mir-19-P2c  Mun-Mir-19-P2c  Neu-Mir-19-P2c  Oan-Mir-19-P2c  Ocu-Mir-19-P2c  Pab-Mir-19-P2c  Pbv-Mir-19-P2c  Rno-Mir-19-P2c  Sha-Mir-19-P2c  Spt-Mir-19-P2c  Sto-Mir-19-P2c  Tgu-Mir-19-P2c  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4  Xtr-Mir-19-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126623.1: 2114677-2114757 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACAAACUGACUUUAACACUAUAUCCAGCUAGUUUUGCAGGUUUGCUUCCAGCUUUAACUUUUUUAUUUAACUUUAAUUUUAAUUUGCUGUGCAAAUCCAUGCAAAACUGACUGUAAGUGGUGGGGCGAAAGCUGCUGGCU
Get precursor sequence
Structure
        10          20        30         40         50        60          
GACAAACUGACUUUAAC--     AUC   C          -  -|    UUC    UUUAACUUUUUUAUUU 
                   ACUAU   CAG UAGUUUUGCA GG UUUGC   CAGC                \
                   UGGUG   GUC GUCAAAACGU CC AAACG   GUCG                A
UCGGUCGUCGAAAGCGGGG     AAU   A          A  U^    U--    UUUAAUUUUAAUUUCA 
 .       130       120       110       100          90        80
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-19-P2c_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCAGGUUUGCUUCCAGC -23
Get sequence
Mature sequence

Lch-Mir-19-P2c_3p (predicted)

mirBase accessionNone
Sequence
58- UGUGCAAAUCCAUGCAAAACUGA -81
Get sequence