MirGeneDB ID | Lch-Mir-19-P2c |
---|---|
Family name | MIR-19 (all species) |
Seed | GUGCAAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-19-P1a Lch-Mir-19-P2a Lch-Mir-19-P2d |
Orthologues | Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mmu-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126623.1: 2114677-2114757 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | GACAAACUGACUUUAACACUAUAUCCAGCUAGUUUUGCAGGUUUGCUUCCAGCUUUAACUUUUUUAUUUAACUUUAAUUUUAAUUUGCUGUGCAAAUCCAUGCAAAACUGACUGUAAGUGGUGGGGCGAAAGCUGCUGGCUGet precursor sequence |
Structure | 10 20 30 40 50 60 GACAAACUGACUUUAAC-- AUC C - -| UUC UUUAACUUUUUUAUUU ACUAU CAG UAGUUUUGCA GG UUUGC CAGC \ UGGUG GUC GUCAAAACGU CC AAACG GUCG A UCGGUCGUCGAAAGCGGGG AAU A A U^ U-- UUUAAUUUUAAUUUCA . 130 120 110 100 90 80 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Lch-Mir-19-P2c_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUUUUGCAGGUUUGCUUCCAGC -23
Get sequence
|
Mature sequence | Lch-Mir-19-P2c_3p (predicted) |
mirBase accession | None |
Sequence |
58- UGUGCAAAUCCAUGCAAAACUGA -81
Get sequence
|