Mir-19-P2c

MirGeneDB ID

Mmu-Mir-19-P2c

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-19b-2

Paralogues

Mmu-Mir-19-P1a Mmu-Mir-19-P2a

Orthologues

Aca-Mir-19-P2c Ami-Mir-19-P2c Bta-Mir-19-P2c Cfa-Mir-19-P2c Cja-Mir-19-P2c Cli-Mir-19-P2c Cmi-Mir-19-P2c Cpi-Mir-19-P2c Cpo-Mir-19-P2c Dno-Mir-19-P2c Dre-Mir-19-P2c Eca-Mir-19-P2c Ete-Mir-19-P2c Gga-Mir-19-P2c Gja-Mir-19-P2c Gmo-Mir-19-P2c Hsa-Mir-19-P2c Laf-Mir-19-P2c Lch-Mir-19-P2c Mdo-Mir-19-P2c Mml-Mir-19-P2c Mmr-Mir-19-P2c Mun-Mir-19-P2c Neu-Mir-19-P2c Oan-Mir-19-P2c Ocu-Mir-19-P2c Pab-Mir-19-P2c Pbv-Mir-19-P2c Rno-Mir-19-P2c Sha-Mir-19-P2c Spt-Mir-19-P2c Sto-Mir-19-P2c Tgu-Mir-19-P2c Xla-Mir-19-P2c3 Xla-Mir-19-P2c4 Xtr-Mir-19-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chrX: 52741991-52742056 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2c)

Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACAGCGCAAGGACAUUGCUACUUACGAUUAGUUUUGCAGAUUUGCAGUUCAGCGUAUAUGUGAAUAUAUGGCUGUGCAAAUCCAUGCAAAACUGAUUGUGGGAAUGUGUACCUUUCUGCAUCGUA

Get precursor sequence

Structure

        10        20          30          40        50        60   
UACAGCGCAAGGACAUUGCUA--                  --|       GUU    GUAUAUGU 
                       CUUACGAUUAGUUUUGCA  GAUUUGCA   CAGC        \
                       GGGUGUUAGUCAAAACGU  CUAAACGU   GUCG        G
AUGCUACGUCUUUCCAUGUGUAA                  AC^       ---    GUAUAUAA 
    120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-19-P2c_5p*

mirBase accession

MIMAT0017010

Sequence

0- AGUUUUGCAGAUUUGCAGUUCAGC -24

Get sequence

Proposed targets

TargetScanVert: mmu-miR-19b-2-5p
miRDB: MIMAT0017010

Mature sequence

Mmu-Mir-19-P2c_3p

mirBase accession

MIMAT0000513

Sequence

43- UGUGCAAAUCCAUGCAAAACUGA -66

Get sequence

Proposed targets

microrna.org: MIMAT0000513
TargetScanVert: mmu-miR-19b-3p
miRDB: MIMAT0000513