Mir-92-P2c

MirGeneDB ID

Mmu-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-363

Paralogues

Mmu-Mir-92-P1a Mmu-Mir-92-P1c Mmu-Mir-92-P1d Mmu-Mir-92-P2a Mmu-Mir-92-P2d

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Hsa-Mir-92-P2c Isc-Mir-92 Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mun-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chrX: 52741697-52741761 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c)

Mir-92-P2c chrX: 52741697-52741761 [-] UCSC Ensembl
Mir-92-P1c chrX: 52741853-52741913 [-] UCSC Ensembl
Mir-19-P2c chrX: 52741991-52742056 [-] UCSC Ensembl
Mir-17-P4c chrX: 52742121-52742181 [-] UCSC Ensembl
Mir-17-P2c chrX: 52742341-52742403 [-] UCSC Ensembl
Mir-17-P1c chrX: 52742505-52742563 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAUUAUGAAAUGAACUGUUUUGCUGUUAUCAGGUGGAACACGAUGCAAUUUUGGUUGGUGUAAUAGGAGGAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACCUAUGUGGACAGCCGUCUA

Get precursor sequence

Structure

        10          20        30         40        50        60  
UAAUUAUGAAAUGAACU--       U   AU        -| A  A         GGUUGGUG 
                   GUUUUGC GUU  CAGGUGGA AC CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCU UG GC ACGUUAAAA        A
AUCUGCCGACAGGUGUAUC       C   AU        A^ -  -         GGAGGAUA 
   120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

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Star sequence

Mmu-Mir-92-P2c_5p*

mirBase accession

MIMAT0017076

Sequence

0- CAGGUGGAACACGAUGCAAUUUU -23

Get sequence

Proposed targets

TargetScanVert: mmu-miR-363-5p
miRDB: MIMAT0017076

Mature sequence

Mmu-Mir-92-P2c_3p

mirBase accession

MIMAT0000708

Sequence

43- AAUUGCACGGUAUCCAUCUGUA -65

Get sequence

Proposed targets

microrna.org: MIMAT0000708
TargetScanVert: mmu-miR-363-3p
miRDB: MIMAT0000708