Mir-92-P2c

MirGeneDB ID

Ami-Mir-92-P2c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

American alligator (Alligator mississippiensis)

MiRBase ID

Paralogues

Ami-Mir-92-P1a Ami-Mir-92-P1c Ami-Mir-92-P1d Ami-Mir-92-P2a

Orthologues

Aca-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cja-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711293.1: 2599564-2599628 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CCGGGUGGUUAUGCUUUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUUUAGAAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACCUUCAUCGCUGACAACGUA

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Structure

        10          20        30        40        50        60  
CCGGGUGGUUAUGCUUU--|      U   GU         CA  A         GAUUAGUU 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAA        A
AUGCAACAGUCGCUACUUC^      C   AU         UG  -         AGAGGAAG 
   120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Star sequence

Ami-Mir-92-P2c_5p*

mirBase accession

None

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

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Mature sequence

Ami-Mir-92-P2c_3p

mirBase accession

None

Sequence

43- AAUUGCACGGUAUCCAUCUGUA -65

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