MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-92-P2c

Family name MIR-92 (all species)
Seed AUUGCAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-92-P1a  Cja-Mir-92-P1c  Cja-Mir-92-P1d  Cja-Mir-92-P2a  Cja-Mir-92-P2d 
Orthologues Aca-Mir-92-P2c  Ami-Mir-92-P2c  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2c  Cel-Mir-92  Cfa-Mir-92-P2c  Cli-Mir-92-P2c  Cmi-Mir-92-P2c  Cpi-Mir-92-P2c  Cpo-Mir-92-P2c  Dno-Mir-92-P2c  Dre-Mir-92-P2c  Eca-Mir-92-P2c  Esc-Mir-92  Ete-Mir-92-P2c  Gga-Mir-92-P2c  Gja-Mir-92-P2c  Gmo-Mir-92-P2c  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2c  Isc-Mir-92  Laf-Mir-92-P2c  Lch-Mir-92-P2c  Loc-Mir-92-P2c  Mdo-Mir-92-P2c  Mml-Mir-92-P2c  Mmr-Mir-92-P2c  Mmu-Mir-92-P2c  Mun-Mir-92-P2c  Neu-Mir-92-P2c  Oan-Mir-92-P2c  Obi-Mir-92  Ocu-Mir-92-P2c  Pab-Mir-92-P2c  Pbv-Mir-92-P2c  Rno-Mir-92-P2c  Sha-Mir-92-P2c  Sme-Mir-92  Spt-Mir-92-P2c  Sto-Mir-92-P2c  Tgu-Mir-92-P2c  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xtr-Mir-92-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 125646347-125646411 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUUGUAAAAUGAUCUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUAUCAUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACCUUUGUUGGCGACAUUCCU
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Structure
        10          20        30        40        50        60  
GCAUUGUAAAAUGAUCU--|      U   GU         CA  A         GAUUAGUA 
                   GUUUUGC GUU  CGGGUGGAU  CG UGCAAUUUU        U
                   CAGGACG CAA  GUCUACCUA  GC ACGUUAAAA        C
UCCUUACAGCGGUUGUUUC^      C   AU         UG  -         AGAGGAUA 
   120       110       100        90         80        70
Deep sequencing
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CommentThe 3' terminus of the 3p arm might be monoadenylated. The fold pattern in mirMiner would imply that the 3' end of the 3p arm is 1 nt too long; when folded by mFold, the 3' end is the correct length.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Cja-Mir-92-P2c_5p*
mirBase accessionNone
Sequence 
0- CGGGUGGAUCACGAUGCAAUUUU -23
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Mature sequence

Cja-Mir-92-P2c_3p
mirBase accessionNone
Sequence 
43- AAUUGCACGGUAUCCAUCUGUA -65
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