| MirGeneDB ID | Cja-Mir-92-P2c |
|---|---|
| Family name | MIR-92 (all species) |
| Seed | AUUGCAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-92-P1a Cja-Mir-92-P1c Cja-Mir-92-P1d Cja-Mir-92-P2a Cja-Mir-92-P2d |
| Orthologues | Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Eca-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2c Isc-Mir-92 Laf-Mir-92-P2c Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmr-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Neu-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pab-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xtr-Mir-92-P2c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 125646347-125646411 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAUUGUAAAAUGAUCUGUUUUGCUGUUGUCGGGUGGAUCACGAUGCAAUUUUGAUUAGUAUCAUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGGACCUUUGUUGGCGACAUUCCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCAUUGUAAAAUGAUCU--| U GU CA A GAUUAGUA GUUUUGC GUU CGGGUGGAU CG UGCAAUUUU U CAGGACG CAA GUCUACCUA GC ACGUUAAAA C UCCUUACAGCGGUUGUUUC^ C AU UG - AGAGGAUA 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | The 3' terminus of the 3p arm might be monoadenylated. The fold pattern in mirMiner would imply that the 3' end of the 3p arm is 1 nt too long; when folded by mFold, the 3' end is the correct length. |
| 3' NTU | No |
| Motifs | UG at 5p(-14) |
| Star sequence | Cja-Mir-92-P2c_5p* |
| mirBase accession | None |
| Sequence |
0- CGGGUGGAUCACGAUGCAAUUUU -23
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|
| Mature sequence | Cja-Mir-92-P2c_3p |
| mirBase accession | None |
| Sequence |
43- AAUUGCACGGUAUCCAUCUGUA -65
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|
