Mir-92-P2a

MirGeneDB ID

Cja-Mir-92-P2a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-92-P1a Cja-Mir-92-P1c Cja-Mir-92-P1d Cja-Mir-92-P2c Cja-Mir-92-P2d

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021917.1: 80664486-80664544 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGUGUGCAGUUCAUGGCUACAGGCCAUUACUGUUGCUAAUAUGCAACUCUGUUGAACAAAAUUGGAAUUGCACUUUAGCAAUGGUGAUGGAUUGUUAAGCCAACGACAACAGAAUUU

Get precursor sequence

Structure

        10        20          30        40        50         
UUUGUGUGCAGUUCAUGGCU--|   G                UA     C   GUUGAA 
                      ACAG CCAUUACUGUUGCUAA  UGCAA UCU      \
                      UGUU GGUAGUGGUAACGAUU  ACGUU AGG      C
UUUAAGACAACAGCAACCGAAU^   A                UC     A   UUAAAA 
       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Cja-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGUUGCUAAUAUGCAACUCU -22

Get sequence

Mature sequence

Cja-Mir-92-P2a_3p (predicted)

mirBase accession

None

Sequence

37- AAUUGCACUUUAGCAAUGGUGA -59

Get sequence