Mir-92-P2a

MirGeneDB ID

Eca-Mir-92-P2a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-367

Paralogues

Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P1d Eca-Mir-92-P2c Eca-Mir-92-P2d

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 114121041-114121100 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P1 CM009149.1: 114120447-114120508 [+] UCSC Ensembl
Mir-430-P2 CM009149.1: 114120580-114120639 [+] UCSC Ensembl
Mir-430-P3 CM009149.1: 114120752-114120812 [+] UCSC Ensembl
Mir-430-P4 CM009149.1: 114120912-114120972 [+] UCSC Ensembl
Mir-92-P2a CM009149.1: 114121041-114121100 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUGUGCAGAGACCUUGGGCAUAUGCCAUCACUGUUGCUAAUAUGCAACUCUGUUCAAUACAAACUGGAAUUGCACUUUAGCAAUGGUGACGGAGUGUGUCAACUGCCAACAAUUACCAC

Get precursor sequence

Structure

        10          20        30        40        50         
ACUGUGCAGAGACCUUG--|      G  A             UA     C   GUUCAA 
                   GGCAUAU CC UCACUGUUGCUAA  UGCAA UCU      U
                   CUGUGUG GG AGUGGUAACGAUU  ACGUU AGG      A
CACCAUUAACAACCGUCAA^      A  C             UC     A   UCAAAC 
.       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGUUGCUAAUAUGCAACUCU -22

Get sequence

Mature sequence

Eca-Mir-92-P2a_3p (predicted)

mirBase accession

MIMAT0012918

Sequence

38- AAUUGCACUUUAGCAAUGGUGA -60

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