Mir-92-P2a

MirGeneDB ID

Eca-Mir-92-P2a

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-367

Paralogues

Eca-Mir-92-P1a Eca-Mir-92-P1c Eca-Mir-92-P1d Eca-Mir-92-P2c Eca-Mir-92-P2d

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gja-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 114121041-114121100 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P1 CM009149.1: 114120447-114120508 [+] UCSC Ensembl
Mir-430-P2 CM009149.1: 114120580-114120639 [+] UCSC Ensembl
Mir-430-P3 CM009149.1: 114120752-114120812 [+] UCSC Ensembl
Mir-430-P4 CM009149.1: 114120912-114120972 [+] UCSC Ensembl
Mir-92-P2a CM009149.1: 114121041-114121100 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUGUGCAGAGACCUUGGGCAUAUGCCAUCACUGUUGCUAAUAUGCAACUCUGUUCAAUACAAACUGGAAUUGCACUUUAGCAAUGGUGACGGAGUGUGUCAACUGCCAACAAUUACCAC

Get precursor sequence

Structure

        10          20        30        40        50         
ACUGUGCAGAGACCUUG--|      G  A             UA     C   GUUCAA 
                   GGCAUAU CC UCACUGUUGCUAA  UGCAA UCU      U
                   CUGUGUG GG AGUGGUAACGAUU  ACGUU AGG      A
CACCAUUAACAACCGUCAA^      A  C             UC     A   UCAAAC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGUUGCUAAUAUGCAACUCU -22

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Mature sequence

Eca-Mir-92-P2a_3p (predicted)

mirBase accession

MIMAT0012918

Sequence

38- AAUUGCACUUUAGCAAUGGUGA -60

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