Mir-430-P4

MirGeneDB ID

Eca-Mir-430-P4

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-302d

Paralogues

Eca-Mir-430-P1 Eca-Mir-430-P2 Eca-Mir-430-P3 Eca-Mir-430-P5 Eca-Mir-430-P6 Eca-Mir-430-P7

Orthologues

Ami-Mir-430-P4 Bta-Mir-430-P4 Cfa-Mir-430-P4 Cja-Mir-430-P4 Cli-Mir-430-P4 Cmi-Mir-430-P4 Cpi-Mir-430-P4 Cpo-Mir-430-P4 Dno-Mir-430-P4 Ete-Mir-430-P4 Gga-Mir-430-P4 Hsa-Mir-430-P4 Laf-Mir-430-P4 Mdo-Mir-430-P4 Mml-Mir-430-P4 Mmr-Mir-430-P4 Mmu-Mir-430-P4 Oan-Mir-430-P4 Ocu-Mir-430-P4 Pab-Mir-430-P4 Rno-Mir-430-P4 Spt-Mir-430-P4 Sto-Mir-430-P4 Tgu-Mir-430-P4 Xla-Mir-430-o4a Xla-Mir-430-o4b Xtr-Mir-430-o4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 114120912-114120972 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P4)

Mir-430-P1 CM009149.1: 114120447-114120508 [+] UCSC Ensembl
Mir-430-P2 CM009149.1: 114120580-114120639 [+] UCSC Ensembl
Mir-430-P3 CM009149.1: 114120752-114120812 [+] UCSC Ensembl
Mir-430-P4 CM009149.1: 114120912-114120972 [+] UCSC Ensembl
Mir-92-P2a CM009149.1: 114121041-114121100 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUUUUAAAUCUGUUAAGGAACACCCUCUACUUUAACAUGGAGGCACUUGCUGUGACUUGAGAAAAAUAAGUGCUUCCAUGUUUUAGUGUGGUGGUUCCUUUUUAAUCCUCAACCGUGUU

Get precursor sequence

Structure

        10           20        30        40        50          
GCCUUUUAAAUCUGUUA---|     AC  UC    UU                CUGUGACU 
                    AGGAAC  CC  UACU  AACAUGGAGGCACUUG        \
                    UCCUUG  GG  GUGA  UUGUACCUUCGUGAAU        U
UUGUGCCAACUCCUAAUUUU^     GU  U-    UU                AAAAAGAG 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-430-P4_5p* (predicted)

mirBase accession

None

Sequence

0- ACUUUAACAUGGAGGCACUUGCU -23

Get sequence

Mature sequence

Eca-Mir-430-P4_3p

mirBase accession

MIMAT0012914

Sequence

38- UAAGUGCUUCCAUGUUUUAGUGU -61

Get sequence