| MirGeneDB ID | Xla-Mir-430-o4a |
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| Family name |
MIR-430 (all species) |
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| Seed |
CUGACAA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-430-o4b
Xla-Mir-430-o5o1
Xla-Mir-430-o5o2
Xla-Mir-430-o5p1
Xla-Mir-430-o5p2
Xla-Mir-430-o5q1
Xla-Mir-430-o5q2
Xla-Mir-430-o5r
Xla-Mir-430-o5s
Xla-Mir-430-o6a
Xla-Mir-430-o6b
Xla-Mir-430-o7a
Xla-Mir-430-o7b
Xla-Mir-430-o8a
Xla-Mir-430-o8b
Xla-Mir-430-o9
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xla-Mir-430-P3a
Xla-Mir-430-P3b
|
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| Orthologues |
Ami-Mir-430-P4
Bta-Mir-430-P4
Cfa-Mir-430-P4
Cja-Mir-430-P4
Cli-Mir-430-P4
Cmi-Mir-430-P4
Cpi-Mir-430-P4
Cpo-Mir-430-P4
Dno-Mir-430-P4
Eca-Mir-430-P4
Ete-Mir-430-P4
Gga-Mir-430-P4
Hsa-Mir-430-P4
Laf-Mir-430-P4
Mdo-Mir-430-P4
Mml-Mir-430-P4
Mmr-Mir-430-P4
Mmu-Mir-430-P4
Oan-Mir-430-P4
Ocu-Mir-430-P4
Pab-Mir-430-P4
Rno-Mir-430-P4
Spt-Mir-430-P4
Sto-Mir-430-P4
Tgu-Mir-430-P4
Xtr-Mir-430-o4
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 61970555-61970612 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUUUGUGUUUAGAGAAAAGGAGCCACUUCUGCUGACAACAUGAGGCACGUGCUAAUAAGCCAAUAGUAAGUGCUUUAUGUUUUGGCAGAUAUGACUUCUCAUUAUGUGUCCAACUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUUGUGUUUAGAGAAA--| C CU UG C G AAUAA
AGGAG CA UCUGC A AACAUGAGGCAC UGCU \
UCUUC GU AGACG U UUGUAUUUCGUG AUGA G
UGUUCAACCUGUGUAUUAC^ A AU GU - A UAACC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-430-o4a_5p |
| mirBase accession | None |
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| Sequence |
0- GCUGACAACAUGAGGCACGUGCU -23
Get sequence
|
|---|
| Star sequence |
Xla-Mir-430-o4a_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UAAGUGCUUUAUGUUUUGGCAG -58
Get sequence
|
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