MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-430-P4

Family name MIR-430 (all species)
Seed AAGUGCU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-430-P1  Spt-Mir-430-P2  Spt-Mir-430-P3 
Orthologues Ami-Mir-430-P4  Bta-Mir-430-P4  Cfa-Mir-430-P4  Cli-Mir-430-P4  Cmi-Mir-430-P4  Cpi-Mir-430-P4  Cpo-Mir-430-P4  Dno-Mir-430-P4  Ete-Mir-430-P4  Gga-Mir-430-P4  Hsa-Mir-430-P4  Mdo-Mir-430-P4  Mml-Mir-430-P4  Mmu-Mir-430-P4  Oan-Mir-430-P4  Ocu-Mir-430-P4  Rno-Mir-430-P4  Sto-Mir-430-P4  Tgu-Mir-430-P4  Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xtr-Mir-430-o4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01012655.1: 3307778-3307837 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCUUGACUAGUCUAAAGGGAUCUCUUCUACUUUAACCUGGAAGUACUUGCUGGAUGUUGAAAAAGUAAGUGCUUCCUUGUUUUAGUUGUGGUGAAUCCUAAAUGCUCAUUUAUGAAAC
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Structure
        10          20        30        40        50         
GUUCUUGACUAGUCUAA--|   A  U  UCU   UU   CU             GGAUG 
                   AGGG UC CU   ACU  AAC  GGAAGUACUUGCU     U
                   UCCU AG GG   UGA  UUG  CCUUCGUGAAUGA     U
CAAAGUAUUUACUCGUAAA^   A  U  UGU   UU   UU             AAAAG 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Spt-Mir-430-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAACCUGGAAGUACUUGCU -23
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Mature sequence

Spt-Mir-430-P4_3p (predicted)

mirBase accessionNone
Sequence
37- UAAGUGCUUCCUUGUUUUAGUUG -60
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