MirGeneDB ID | Spt-Mir-430-P4 |
---|---|
Family name | MIR-430 (all species) |
Seed | AAGUGCU |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-430-P1 Spt-Mir-430-P2 Spt-Mir-430-P3 |
Orthologues | Ami-Mir-430-P4 Bta-Mir-430-P4 Cfa-Mir-430-P4 Cja-Mir-430-P4 Cli-Mir-430-P4 Cmi-Mir-430-P4 Cpi-Mir-430-P4 Cpo-Mir-430-P4 Dno-Mir-430-P4 Eca-Mir-430-P4 Ete-Mir-430-P4 Gga-Mir-430-P4 Hsa-Mir-430-P4 Laf-Mir-430-P4 Mdo-Mir-430-P4 Mml-Mir-430-P4 Mmr-Mir-430-P4 Mmu-Mir-430-P4 Oan-Mir-430-P4 Ocu-Mir-430-P4 Pab-Mir-430-P4 Rno-Mir-430-P4 Sto-Mir-430-P4 Tgu-Mir-430-P4 Xla-Mir-430-o4a Xla-Mir-430-o4b Xtr-Mir-430-o4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01012655.1: 3307778-3307837 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GUUCUUGACUAGUCUAAAGGGAUCUCUUCUACUUUAACCUGGAAGUACUUGCUGGAUGUUGAAAAAGUAAGUGCUUCCUUGUUUUAGUUGUGGUGAAUCCUAAAUGCUCAUUUAUGAAACGet precursor sequence |
Structure | 10 20 30 40 50 GUUCUUGACUAGUCUAA--| A U UCU UU CU GGAUG AGGG UC CU ACU AAC GGAAGUACUUGCU U UCCU AG GG UGA UUG CCUUCGUGAAUGA U CAAAGUAUUUACUCGUAAA^ A U UGU UU UU AAAAG . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Spt-Mir-430-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACUUUAACCUGGAAGUACUUGCU -23
Get sequence
|
Mature sequence | Spt-Mir-430-P4_3p (predicted) |
mirBase accession | None |
Sequence |
37- UAAGUGCUUCCUUGUUUUAGUUG -60
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|