MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-430-P4

Family name MIR-430 (all species)
Seed AAGUGCU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-430-P1  Cja-Mir-430-P2  Cja-Mir-430-P3  Cja-Mir-430-P5  Cja-Mir-430-P6  Cja-Mir-430-P7  Cja-Mir-430-P8  Cja-Mir-430-P9  Cja-Mir-430-P10  Cja-Mir-430-P11 
Orthologues Ami-Mir-430-P4  Bta-Mir-430-P4  Cfa-Mir-430-P4  Cli-Mir-430-P4  Cmi-Mir-430-P4  Cpi-Mir-430-P4  Cpo-Mir-430-P4  Dno-Mir-430-P4  Eca-Mir-430-P4  Ete-Mir-430-P4  Gga-Mir-430-P4  Hsa-Mir-430-P4  Laf-Mir-430-P4  Mdo-Mir-430-P4  Mml-Mir-430-P4  Mmr-Mir-430-P4  Mmu-Mir-430-P4  Oan-Mir-430-P4  Ocu-Mir-430-P4  Pab-Mir-430-P4  Rno-Mir-430-P4  Spt-Mir-430-P4  Sto-Mir-430-P4  Tgu-Mir-430-P4  Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xtr-Mir-430-o4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021917.1: 80664356-80664416 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUUUAAAGUCUGUUCAGGAACCCCCUCUACUUUAACAUGGAGGCACUUGCUGAGACAUGACAAAAAUAAGUGCUUCCAUGUUUGAGUGUGGUGGUUCCUACUUAAUCAGCAAUUGUGUU
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Structure
        10           20        30        40        50          
UAUUUUAAAGUCUGUUC---|      C  UC     U                CUGAGACA 
                    AGGAACC CC  UACUU AACAUGGAGGCACUUG        \
                    UCCUUGG GG  GUGAG UUGUACCUUCGUGAAU        U
UUGUGUUAACGACUAAUUCA^      U  U-     U                AAAAACAG 
 .       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-430-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAACAUGGAGGCACUUGCU -23
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Mature sequence

Cja-Mir-430-P4_3p (predicted)

mirBase accessionNone
Sequence
38- UAAGUGCUUCCAUGUUUGAGUGU -61
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