MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-430-P1

Family name MIR-430 (all species)
Seed AAGUGCU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-430-P2  Cja-Mir-430-P3  Cja-Mir-430-P4  Cja-Mir-430-P5  Cja-Mir-430-P6  Cja-Mir-430-P7  Cja-Mir-430-P8  Cja-Mir-430-P9  Cja-Mir-430-P10  Cja-Mir-430-P11 
Orthologues Aca-Mir-430-P1  Ami-Mir-430-P1  Bta-Mir-430-P1  Cfa-Mir-430-P1  Cli-Mir-430-P1  Cmi-Mir-430-P1  Cpi-Mir-430-P1  Cpo-Mir-430-P1  Dno-Mir-430-P1  Dre-Mir-430-o1a  Dre-Mir-430-o1b1  Dre-Mir-430-o1b2  Dre-Mir-430-o1b3  Dre-Mir-430-o1b4  Dre-Mir-430-o1b5  Dre-Mir-430-o1b6  Dre-Mir-430-o1b7  Dre-Mir-430-o1b8  Dre-Mir-430-o1c  Dre-Mir-430-o1d1  Dre-Mir-430-o1d2  Dre-Mir-430-o1d3  Dre-Mir-430-o1d4  Dre-Mir-430-o1d5  Dre-Mir-430-o1d6  Dre-Mir-430-o1d7  Dre-Mir-430-o1e1  Dre-Mir-430-o1e2  Dre-Mir-430-o1e3  Eca-Mir-430-P1  Ete-Mir-430-P1  Gga-Mir-430-P1  Hsa-Mir-430-P1  Laf-Mir-430-P1  Mdo-Mir-430-P1  Mml-Mir-430-P1  Mmr-Mir-430-P1  Mmu-Mir-430-P1  Mun-Mir-430-P1  Neu-Mir-430-P1  Oan-Mir-430-P1  Ocu-Mir-430-P1  Pab-Mir-430-P1  Rno-Mir-430-P1  Sha-Mir-430-P1  Spt-Mir-430-P1  Sto-Mir-430-P1  Tgu-Mir-430-P1  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xtr-Mir-430-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021917.1: 80663864-80663922 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAGUUUUACGUGGGUGGGCUCCCUUCAACUUUAACAUGGAAGUACUUUCUGUGACUUUAAAAGUAAGUGCUUCCAUGUUUUAGUAGAAGUGAAUCCAACUUAUUUCUCCAAAAUAG
Get precursor sequence
Structure
        10          20        30        40        50         
AAGAAGUUUUACGUGGG--|  GC  C    A   UU               U  GUGAC 
                   UGG  UC CUUC ACU  AACAUGGAAGUACUU CU     \
                   ACC  AG GAAG UGA  UUGUACCUUCGUGAA GA     U
GAUAAAACCUCUUUAUUCA^  UA  U    A   UU               U  AAAUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Cja-Mir-430-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAACAUGGAAGUACUUUCU -23
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Mature sequence

Cja-Mir-430-P1_3p (predicted)

mirBase accessionNone
Sequence
36- UAAGUGCUUCCAUGUUUUAGUAG -59
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