MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-430-P1

Family name MIR-430 (all species)
Seed AAGUGCU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-302b
Paralogues Cpo-Mir-430-o28  Cpo-Mir-430-P2  Cpo-Mir-430-P3  Cpo-Mir-430-P4  Cpo-Mir-430-P5 
Orthologues Aca-Mir-430-P1  Ami-Mir-430-P1  Bta-Mir-430-P1  Cfa-Mir-430-P1  Cja-Mir-430-P1  Cli-Mir-430-P1  Cmi-Mir-430-P1  Cpi-Mir-430-P1  Dno-Mir-430-P1  Dre-Mir-430-o1a  Dre-Mir-430-o1b1  Dre-Mir-430-o1b2  Dre-Mir-430-o1b3  Dre-Mir-430-o1b4  Dre-Mir-430-o1b5  Dre-Mir-430-o1b6  Dre-Mir-430-o1b7  Dre-Mir-430-o1b8  Dre-Mir-430-o1c  Dre-Mir-430-o1d1  Dre-Mir-430-o1d2  Dre-Mir-430-o1d3  Dre-Mir-430-o1d4  Dre-Mir-430-o1d5  Dre-Mir-430-o1d6  Dre-Mir-430-o1d7  Dre-Mir-430-o1e1  Dre-Mir-430-o1e2  Dre-Mir-430-o1e3  Eca-Mir-430-P1  Ete-Mir-430-P1  Gga-Mir-430-P1  Hsa-Mir-430-P1  Laf-Mir-430-P1  Mdo-Mir-430-P1  Mml-Mir-430-P1  Mmr-Mir-430-P1  Mmu-Mir-430-P1  Mun-Mir-430-P1  Neu-Mir-430-P1  Oan-Mir-430-P1  Ocu-Mir-430-P1  Pab-Mir-430-P1  Rno-Mir-430-P1  Sha-Mir-430-P1  Spt-Mir-430-P1  Sto-Mir-430-P1  Tgu-Mir-430-P1  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xtr-Mir-430-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_43: 11472221-11472282 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-430-P1)
Mir-92-P2a scaffold_43: 11471746-11471805 [-] UCSC
Mir-430-P4 scaffold_43: 11471856-11471915 [-] UCSC
Mir-430-P3 scaffold_43: 11471975-11472035 [-] UCSC
Mir-430-P2 scaffold_43: 11472099-11472157 [-] UCSC
Mir-430-P1 scaffold_43: 11472221-11472282 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CACGGCAGCCCGAGCAGUGAGCUCCCUUCCACUCUAACGUGGAGGCACUUUCUGGCCUUGCGACAACAGUAAGUGCUUCCAUGUUUUAGUAGAAGUGGGUUCAGCUUCCGGGGCCAGCGGAC
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Structure
        10          20        30        40        50        60
CACGGCAGCCCGAGCAG--|      C    C   CU               U  GGCCUU 
                   UGAGCUC CUUC ACU  AACGUGGAGGCACUU CU      G
                   ACUUGGG GAAG UGA  UUGUACCUUCGUGAA GA      C
CAGGCGACCGGGGCCUUCG^      U    A   UU               U  CAACAG 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-430-P1_5p*

mirBase accessionMIMAT0047148
Sequence
0- ACUCUAACGUGGAGGCACUUUCU -23
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Mature sequence

Cpo-Mir-430-P1_3p (predicted)

mirBase accessionMIMAT0047149
Sequence
39- UAAGUGCUUCCAUGUUUUAGUAG -62
Get sequence