MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-302a
Paralogues Cpo-Mir-430-o28  Cpo-Mir-430-P1  Cpo-Mir-430-P2  Cpo-Mir-430-P4  Cpo-Mir-430-P5 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cja-Mir-430-P3  Cli-Mir-430-P3  Cmi-Mir-430-P3  Cpi-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Eca-Mir-430-P3  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Laf-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmr-Mir-430-P3  Mmu-Mir-430-P3  Neu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Pab-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_43: 11471975-11472035 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-430-P3)
Mir-92-P2a scaffold_43: 11471746-11471805 [-] UCSC
Mir-430-P4 scaffold_43: 11471856-11471915 [-] UCSC
Mir-430-P3 scaffold_43: 11471975-11472035 [-] UCSC
Mir-430-P2 scaffold_43: 11472099-11472157 [-] UCSC
Mir-430-P1 scaffold_43: 11472221-11472282 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CUCGCGCUCCCCGCGCCCGGGCUUCCCACCACUUAAACGUGGACGUACUUGCUUUGGAAGCGAGAAAGUAAGUGCUUCCAUGUUUCGGUGAUGGUAAGUCUCCCUCCCGCGAGCGCCGCGG
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Structure
        10          20        30        40        50          
CUCGCGCUCCCCGCGCCC--|     C   C    U         C         UUGGAA 
                    GGGCUU CCA CACU AAACGUGGA GUACUUGCU      \
                    UCUGAA GGU GUGG UUUGUACCU CGUGAAUGA      G
GGCGCCGCGAGCGCCCUCCC^     U   A    C         U         AAGAGC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-430-P3_5p*

mirBase accessionMIMAT0047146
Sequence
0- ACUUAAACGUGGACGUACUUGCU -23
Get sequence
Mature sequence

Cpo-Mir-430-P3_3p (predicted)

mirBase accessionMIMAT0047147
Sequence
38- UAAGUGCUUCCAUGUUUCGGUGA -61
Get sequence