MirGeneDB ID | Rno-Mir-430-P3 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Norway rat (Rattus norvegicus) |
MiRBase ID |
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Paralogues |
Rno-Mir-430-P1
Rno-Mir-430-P4
Rno-Mir-430-P5a
Rno-Mir-430-P5b
Rno-Mir-430-P5c
Rno-Mir-430-P6a
Rno-Mir-430-P6b
Rno-Mir-430-P7a
Rno-Mir-430-P7b
Rno-Mir-430-P7c
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Orthologues |
Aca-Mir-430-P3
Ami-Mir-430-P3
Bta-Mir-430-P3
Cfa-Mir-430-P3
Cja-Mir-430-P3
Cli-Mir-430-P3
Cmi-Mir-430-P3
Cpi-Mir-430-P3
Cpo-Mir-430-P3
Dno-Mir-430-P3
Dre-Mir-430-o3a1
Dre-Mir-430-o3a2
Dre-Mir-430-o3a3
Dre-Mir-430-o3a4
Dre-Mir-430-o3a5
Dre-Mir-430-o3a6
Dre-Mir-430-o3a7
Dre-Mir-430-o3a8
Dre-Mir-430-o3a9
Dre-Mir-430-o3a10
Dre-Mir-430-o3a11
Dre-Mir-430-o3a12
Dre-Mir-430-o3a13
Dre-Mir-430-o3a14
Dre-Mir-430-o3a15
Dre-Mir-430-o3a16
Dre-Mir-430-o3b1
Dre-Mir-430-o3b2
Eca-Mir-430-P3
Ete-Mir-430-P3
Gga-Mir-430-P3
Gja-Mir-430-P3
Hsa-Mir-430-P3
Laf-Mir-430-P3
Mdo-Mir-430-P3
Mml-Mir-430-P3
Mmr-Mir-430-P3
Mmu-Mir-430-P3
Neu-Mir-430-P3
Oan-Mir-430-P3
Ocu-Mir-430-P3
Pab-Mir-430-P3
Sha-Mir-430-P3
Spt-Mir-430-P3
Sto-Mir-430-P3
Tgu-Mir-430-P3
Xla-Mir-430-P3a
Xla-Mir-430-P3b
Xtr-Mir-430-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (rn6) |
chr2: 231875231-231875291 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCGUAAGUAUAAAGACUGGGCUUCCCACCACUUAAACGUGGUUGUCCUUGCUUUGGAACGAAGAAAGUAAGUGCUUCCAUGUUUGGGUGAUGGUAAGUUUUCCUUUAUCCUCACGCCUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCGUAAGUAUAAAGACU--| C C UU UC UUGGAA
GGGCUU CCA CACUUAAACGUGG G CUUGCU \
UUUGAA GGU GUGGGUUUGUACC C GAAUGA C
UUUCCGCACUCCUAUUUCCU^ U A UU GU AAGAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Dr |
Dr |
Ad |
Bi |
Bi |
Bi |
Bi |
Br |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Du |
Du |
Du |
Du |
Fa |
He |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Ki |
La |
Li |
Li |
Li |
Li |
Li |
Li |
Lu |
Me |
Me |
Mu |
Ov |
Pa |
Pa |
Pa |
Sk |
Sm |
So |
So |
So |
So |
Sp |
St |
St |
St |
St |
Te |
Te |
Th |
Ut |
Wh |
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Star sequence |
Rno-Mir-430-P3_5p* |
mirBase accession | None |
Sequence |
0- ACUUAAACGUGGUUGUCCUUGCU -23
Get sequence
|
Mature sequence |
Rno-Mir-430-P3_3p |
mirBase accession | None |
Sequence |
38- UAAGUGCUUCCAUGUUUGGGUGA -61
Get sequence
|