Mir-430-P5c

MirGeneDB ID

Rno-Mir-430-P5c

Family name

MIR-430 (all species)

Seed

GUGCCGC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-293

Paralogues

Rno-Mir-430-P1 Rno-Mir-430-P3 Rno-Mir-430-P4 Rno-Mir-430-P5a Rno-Mir-430-P5b Rno-Mir-430-P6a Rno-Mir-430-P6b Rno-Mir-430-P7a Rno-Mir-430-P7b Rno-Mir-430-P7c

Orthologues

Bta-Mir-430-P5 Cja-Mir-430-P5 Cpo-Mir-430-P5 Dno-Mir-430-P5 Eca-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Laf-Mir-430-P5 Mml-Mir-430-P5 Mmu-Mir-430-P5c Ocu-Mir-430-P5 Pab-Mir-430-P5 Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25

Node of Origin (locus)

Muridae

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 64537114-64537171 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P5c)

Mir-430-P6b chr1: 64536633-64536691 [-] UCSC Ensembl
Mir-430-P7c chr1: 64536751-64536808 [-] UCSC Ensembl
Mir-430-P5c chr1: 64537114-64537171 [-] UCSC Ensembl
Mir-430-P7b chr1: 64537854-64537910 [-] UCSC Ensembl
Mir-430-P5b chr1: 64538128-64538189 [-] UCSC Ensembl
Mir-430-P7a chr1: 64538418-64538475 [-] UCSC Ensembl
Mir-430-P5a chr1: 64538716-64538773 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACUUAUUUGCAAGUGUUUCCACCUGUGAUACUCAAACUGUGUGACACUUUGUUUCUUUUGGAAGAAGUGCCGCAAAGUUUGCAGUGUUACCGAUGGAGAAAACUGCAGUUAGGGGGC

Get precursor sequence

Structure

        10          20        30         40        50        
AACUUAUUUGCAAGUGU--     CCU        -|     G    A      GUUUCU 
                   UUCCA   GUGAUACU CAAACU UGUG CACUUU      \
                   GAGGU   CAUUGUGA GUUUGA ACGC GUGAAG      U
CGGGGGAUUGACGUCAAAA     AGC        C^     A    C      AAGGUU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-430-P5c_5p*

mirBase accession

MIMAT0012847

Sequence

0- ACUCAAACUGUGUGACACUUU -21

Get sequence

Proposed targets

microrna.org: MIMAT0012847
TargetScanVert: rno-miR-293-5p
miRDB: MIMAT0012847

Mature sequence

Rno-Mir-430-P5c_3p

mirBase accession

MIMAT0017365

Sequence

36- AGUGCCGCAAAGUUUGCAGUGU -58

Get sequence

Proposed targets

TargetScanVert: rno-miR-293-3p
miRDB: MIMAT0017365