Mir-430-P7c

MirGeneDB ID

Rno-Mir-430-P7c

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-294

Paralogues

Rno-Mir-430-P1 Rno-Mir-430-P3 Rno-Mir-430-P4 Rno-Mir-430-P5a Rno-Mir-430-P5b Rno-Mir-430-P5c Rno-Mir-430-P6a Rno-Mir-430-P6b Rno-Mir-430-P7a Rno-Mir-430-P7b

Orthologues

Bta-Mir-430-P7 Cja-Mir-430-P7 Eca-Mir-430-P7 Hsa-Mir-430-P7 Laf-Mir-430-P7 Mml-Mir-430-P7 Mmr-Mir-430-P7 Mmu-Mir-430-P7c Pab-Mir-430-P7 Xtr-Mir-430-o7

Node of Origin (locus)

Muridae

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 64536751-64536808 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P7c)

Mir-430-P6b chr1: 64536633-64536691 [-] UCSC Ensembl
Mir-430-P7c chr1: 64536751-64536808 [-] UCSC Ensembl
Mir-430-P5c chr1: 64537114-64537171 [-] UCSC Ensembl
Mir-430-P7b chr1: 64537854-64537910 [-] UCSC Ensembl
Mir-430-P5b chr1: 64538128-64538189 [-] UCSC Ensembl
Mir-430-P7a chr1: 64538418-64538475 [-] UCSC Ensembl
Mir-430-P5a chr1: 64538716-64538773 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGGAUCUUGGAAAAACCACCAUAGCCAUGCUCAAAAUGGAGGCCCUAUCUAAGCUUUUAAGUAGAAAGUGCUUCCAUUUUGUGUGUUGCUGUGUGGAAGAAGGCAUCCGGGACUUC

Get precursor sequence

Structure

        10           20        30        40        50        
GGAGGAUCUUGGAAAAA---|   C     C    U            C  A   AAGCU 
                    CCAC AUAGC AUGC CAAAAUGGAGGC CU UCU     U
                    GGUG UGUCG UGUG GUUUUACCUUCG GA AGA     U
CUUCAGGGCCUACGGAAGAA^   -     U    U            U  A   UGAAU 
      110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-430-P7c_5p*

mirBase accession

MIMAT0012848

Sequence

0- GCUCAAAAUGGAGGCCCUAUCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0012848
TargetScanVert: rno-miR-294
miRDB: MIMAT0012848

Mature sequence

Rno-Mir-430-P7c_3p

mirBase accession

None

Sequence

36- AAAGUGCUUCCAUUUUGUGUGU -58

Get sequence