Mir-430-P7b

MirGeneDB ID

Rno-Mir-430-P7b

Family name

MIR-430 (all species)

Seed

AUCAAAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-291b

Paralogues

Rno-Mir-430-P1 Rno-Mir-430-P3 Rno-Mir-430-P4 Rno-Mir-430-P5a Rno-Mir-430-P5b Rno-Mir-430-P5c Rno-Mir-430-P6a Rno-Mir-430-P6b Rno-Mir-430-P7a Rno-Mir-430-P7c

Orthologues

Bta-Mir-430-P7 Cja-Mir-430-P7 Eca-Mir-430-P7 Hsa-Mir-430-P7 Laf-Mir-430-P7 Mml-Mir-430-P7 Mmr-Mir-430-P7 Mmu-Mir-430-P7b Pab-Mir-430-P7 Xla-Mir-430-o7b Xtr-Mir-430-o7

Node of Origin (locus)

Muridae

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 64537854-64537910 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P7b)

Mir-430-P6b chr1: 64536633-64536691 [-] UCSC Ensembl
Mir-430-P7c chr1: 64536751-64536808 [-] UCSC Ensembl
Mir-430-P5c chr1: 64537114-64537171 [-] UCSC Ensembl
Mir-430-P7b chr1: 64537854-64537910 [-] UCSC Ensembl
Mir-430-P5b chr1: 64538128-64538189 [-] UCSC Ensembl
Mir-430-P7a chr1: 64538418-64538475 [-] UCSC Ensembl
Mir-430-P5a chr1: 64538716-64538773 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCGGAUCUUGGAAGUUGGAACACAGGGUCCAUCAAAGUGGAGGCCCUCUCCGUGGCUUGGCGGGAAAGUGCAUCCAUUUUGUUAGUCUCUGUGUCCCGCUGGACUCACCUGCCUGC

Get precursor sequence

Structure

        10          20        30        40        50        
CUCGGAUCUUGGAAGUU--| A        UCCAU         G  C  C   GUGGC 
                   GG ACACAGGG     CAAAGUGGA GC CU UCC     \
                   CC UGUGUCUC     GUUUUACCU CG GA AGG     U
CGUCCGUCCACUCAGGUCG^ C        UGAUU         A  U  A   GCGGU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-430-P7b_5p

mirBase accession

None

Sequence

0- CAUCAAAGUGGAGGCCCUCUCC -22

Get sequence

Co-mature sequence

Rno-Mir-430-P7b_3p

mirBase accession

MIMAT0017822

Sequence

35- AAAGUGCAUCCAUUUUGUUAGU -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-291b
miRDB: MIMAT0017822