Mir-430-P5a

MirGeneDB ID

Rno-Mir-430-P5a

Family name

MIR-430 (all species)

Seed

CUCAAAC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-290

Paralogues

Rno-Mir-430-P1 Rno-Mir-430-P3 Rno-Mir-430-P4 Rno-Mir-430-P5b Rno-Mir-430-P5c Rno-Mir-430-P6a Rno-Mir-430-P6b Rno-Mir-430-P7a Rno-Mir-430-P7b Rno-Mir-430-P7c

Orthologues

Bta-Mir-430-P5 Cja-Mir-430-P5 Cpo-Mir-430-P5 Dno-Mir-430-P5 Eca-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Laf-Mir-430-P5 Mml-Mir-430-P5 Mmu-Mir-430-P5a Ocu-Mir-430-P5 Pab-Mir-430-P5 Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23

Node of Origin (locus)

Muridae

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 64538716-64538773 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P5a)

Mir-430-P6b chr1: 64536633-64536691 [-] UCSC Ensembl
Mir-430-P7c chr1: 64536751-64536808 [-] UCSC Ensembl
Mir-430-P5c chr1: 64537114-64537171 [-] UCSC Ensembl
Mir-430-P7b chr1: 64537854-64537910 [-] UCSC Ensembl
Mir-430-P5b chr1: 64538128-64538189 [-] UCSC Ensembl
Mir-430-P7a chr1: 64538418-64538475 [-] UCSC Ensembl
Mir-430-P5a chr1: 64538716-64538773 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCUGCCACCGUGUCUGUCAUCUUGCGGUUCUCAAACUAUGGGGGCACUUUUUUUUUCUUUAAAAAGUGCCGCCAGGUUUUAGGGCCUGCCGGUUGAGAAAACGGCGAUCGGAAACA

Get precursor sequence

Structure

        10          20         30        40        50        
UUGCUGCCACCGUGUCUG--   U  U  -|     C     A   G          UUU 
                    UCA CU GC GGUUCU AAACU UGG GGCACUUUUU   U
                    AGU GG CG CCGGGA UUUGG ACC CCGUGAAAAA   C
ACAAAGGCUAGCGGCAAAAG   U  C  U^     U     -   G          UUU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-430-P5a_5p

mirBase accession

MIMAT0000893

Sequence

0- UCUCAAACUAUGGGGGCACUUUUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000893
TargetScanVert: rno-miR-290
miRDB: MIMAT0000893

Star sequence

Rno-Mir-430-P5a_3p*

mirBase accession

None

Sequence

34- AAAGUGCCGCCAGGUUUUAGGGCC -58

Get sequence