MirGeneDB ID | Rno-Mir-430-P1 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Norway rat (Rattus norvegicus) |
MiRBase ID |
|
Paralogues |
Rno-Mir-430-P3
Rno-Mir-430-P4
Rno-Mir-430-P5a
Rno-Mir-430-P5b
Rno-Mir-430-P5c
Rno-Mir-430-P6a
Rno-Mir-430-P6b
Rno-Mir-430-P7a
Rno-Mir-430-P7b
Rno-Mir-430-P7c
|
Orthologues |
Aca-Mir-430-P1
Ami-Mir-430-P1
Bta-Mir-430-P1
Cfa-Mir-430-P1
Cja-Mir-430-P1
Cli-Mir-430-P1
Cmi-Mir-430-P1
Cpi-Mir-430-P1
Cpo-Mir-430-P1
Dno-Mir-430-P1
Dre-Mir-430-o1a
Dre-Mir-430-o1b1
Dre-Mir-430-o1b2
Dre-Mir-430-o1b3
Dre-Mir-430-o1b4
Dre-Mir-430-o1b5
Dre-Mir-430-o1b6
Dre-Mir-430-o1b7
Dre-Mir-430-o1b8
Dre-Mir-430-o1c
Dre-Mir-430-o1d1
Dre-Mir-430-o1d2
Dre-Mir-430-o1d3
Dre-Mir-430-o1d4
Dre-Mir-430-o1d5
Dre-Mir-430-o1d6
Dre-Mir-430-o1d7
Dre-Mir-430-o1e1
Dre-Mir-430-o1e2
Dre-Mir-430-o1e3
Eca-Mir-430-P1
Ete-Mir-430-P1
Gga-Mir-430-P1
Hsa-Mir-430-P1
Laf-Mir-430-P1
Mdo-Mir-430-P1
Mml-Mir-430-P1
Mmr-Mir-430-P1
Mmu-Mir-430-P1
Mun-Mir-430-P1
Neu-Mir-430-P1
Oan-Mir-430-P1
Ocu-Mir-430-P1
Pab-Mir-430-P1
Sha-Mir-430-P1
Spt-Mir-430-P1
Sto-Mir-430-P1
Tgu-Mir-430-P1
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xtr-Mir-430-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (rn6) |
chr2: 231874984-231875043 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAGCUGCCGGGCGGGCGGGCUCCCUUCCACUUUAACAUGGGAAUGCUUUCUGUCACAUUGAAGAGUAAGUGCUGCCAUGUUUUAGUAGAAGUGAACUCAAGGUUCCCUGGAGGAGUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAGCUGCCGGGCGGGC--| C C C UU GAA U GUCAC
GGG UC CUUC ACU AACAUGG UGCUU CU A
CUC AG GAAG UGA UUGUACC GUGAA GA U
AGUGAGGAGGUCCCUUGGAA^ A U A UU GUC U GAAGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Dr |
Dr |
Ad |
Bi |
Bi |
Bi |
Bi |
Br |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Du |
Du |
Du |
Du |
Fa |
He |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Ki |
La |
Li |
Li |
Li |
Li |
Li |
Li |
Lu |
Me |
Me |
Mu |
Ov |
Pa |
Pa |
Pa |
Sk |
Sm |
So |
So |
So |
So |
Sp |
St |
St |
St |
St |
Te |
Te |
Th |
Ut |
Wh |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Rno-Mir-430-P1_5p* |
mirBase accession | None |
Sequence |
0- ACUUUAACAUGGGAAUGCUUUCU -23
Get sequence
|
Mature sequence |
Rno-Mir-430-P1_3p |
mirBase accession | None |
Sequence |
37- UAAGUGCUGCCAUGUUUUAGUAG -60
Get sequence
|