Mir-430-o1c

MirGeneDB ID

Dre-Mir-430-o1c

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-430a-11

Paralogues

Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Dre-Mir-430-o2a1 Dre-Mir-430-o2a2 Dre-Mir-430-o2a3 Dre-Mir-430-o2a4 Dre-Mir-430-o2a5 Dre-Mir-430-o2a6 Dre-Mir-430-o2a7 Dre-Mir-430-o2a8 Dre-Mir-430-o2a9 Dre-Mir-430-o2a10 Dre-Mir-430-o2a11 Dre-Mir-430-o2a12 Dre-Mir-430-o2a13 Dre-Mir-430-o2a14 Dre-Mir-430-o2b Dre-Mir-430-o2c1 Dre-Mir-430-o2c2 Dre-Mir-430-o2c3 Dre-Mir-430-o2d1 Dre-Mir-430-o2d2 Dre-Mir-430-o3a1 Dre-Mir-430-o3a2 Dre-Mir-430-o3a3 Dre-Mir-430-o3a4 Dre-Mir-430-o3a5 Dre-Mir-430-o3a6 Dre-Mir-430-o3a7 Dre-Mir-430-o3a8 Dre-Mir-430-o3a9 Dre-Mir-430-o3a10 Dre-Mir-430-o3a11 Dre-Mir-430-o3a12 Dre-Mir-430-o3a13 Dre-Mir-430-o3a14 Dre-Mir-430-o3a15 Dre-Mir-430-o3a16 Dre-Mir-430-o3b1 Dre-Mir-430-o3b2

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Eca-Mir-430-P1 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xtr-Mir-430-P1

Node of Origin (locus)

D. rerio

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr4: 28701436-28701494 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o1c)

Mir-430-o3a1 chr4: 28693379-28693437 [+] UCSC Ensembl
Mir-430-o2b chr4: 28693640-28693698 [+] UCSC Ensembl
Mir-430-o1d1 chr4: 28693846-28693904 [+] UCSC Ensembl
Mir-430-o3a2 chr4: 28693983-28694041 [+] UCSC Ensembl
Mir-430-o2a1 chr4: 28694231-28694289 [+] UCSC Ensembl
Mir-430-o1b1 chr4: 28694962-28695020 [+] UCSC Ensembl
Mir-430-o3a3 chr4: 28695121-28695179 [+] UCSC Ensembl
Mir-430-o2a2 chr4: 28695382-28695440 [+] UCSC Ensembl
Mir-430-o1d2 chr4: 28695588-28695646 [+] UCSC Ensembl
Mir-430-o3a4 chr4: 28695725-28695783 [+] UCSC Ensembl
Mir-430-o2a3 chr4: 28695972-28696030 [+] UCSC Ensembl
Mir-430-o1b2 chr4: 28696703-28696761 [+] UCSC Ensembl
Mir-430-o3a5 chr4: 28696862-28696920 [+] UCSC Ensembl
Mir-430-o2c1 chr4: 28697123-28697181 [+] UCSC Ensembl
Mir-430-o1d3 chr4: 28697329-28697387 [+] UCSC Ensembl
Mir-430-o3a6 chr4: 28697466-28697524 [+] UCSC Ensembl
Mir-430-o2a4 chr4: 28697727-28697785 [+] UCSC Ensembl
Mir-430-o1d4 chr4: 28697933-28697991 [+] UCSC Ensembl
Mir-430-o2d1 chr4: 28698317-28698375 [+] UCSC Ensembl
Mir-430-o1b3 chr4: 28699047-28699105 [+] UCSC Ensembl
Mir-430-o3a7 chr4: 28699206-28699264 [+] UCSC Ensembl
Mir-430-o2a5 chr4: 28699467-28699525 [+] UCSC Ensembl
Mir-430-o1e1 chr4: 28699673-28699731 [+] UCSC Ensembl
Mir-430-o3a16 chr4: 28699832-28699890 [+] UCSC Ensembl
Mir-430-o2a6 chr4: 28700079-28700137 [+] UCSC Ensembl
Mir-430-o1b4 chr4: 28700810-28700868 [+] UCSC Ensembl
Mir-430-o3a15 chr4: 28700969-28701027 [+] UCSC Ensembl
Mir-430-o2c2 chr4: 28701230-28701288 [+] UCSC Ensembl
Mir-430-o1c chr4: 28701436-28701494 [+] UCSC Ensembl
Mir-430-o3a14 chr4: 28701595-28701653 [+] UCSC Ensembl
Mir-430-o2a7 chr4: 28701856-28701914 [+] UCSC Ensembl
Mir-430-o1e2 chr4: 28702062-28702120 [+] UCSC Ensembl
Mir-430-o3a13 chr4: 28702221-28702279 [+] UCSC Ensembl
Mir-430-o2a14 chr4: 28702468-28702526 [+] UCSC Ensembl
Mir-430-o1b8 chr4: 28703199-28703257 [+] UCSC Ensembl
Mir-430-o2a13 chr4: 28703619-28703677 [+] UCSC Ensembl
Mir-430-o1d5 chr4: 28703825-28703883 [+] UCSC Ensembl
Mir-430-o2d2 chr4: 28704209-28704267 [+] UCSC Ensembl
Mir-430-o1b7 chr4: 28704939-28704997 [+] UCSC Ensembl
Mir-430-o2a12 chr4: 28705359-28705417 [+] UCSC Ensembl
Mir-430-o1e3 chr4: 28705565-28705623 [+] UCSC Ensembl
Mir-430-o3a12 chr4: 28705724-28705782 [+] UCSC Ensembl
Mir-430-o2a11 chr4: 28705971-28706029 [+] UCSC Ensembl
Mir-430-o1b6 chr4: 28706702-28706760 [+] UCSC Ensembl
Mir-430-o3a11 chr4: 28706861-28706919 [+] UCSC Ensembl
Mir-430-o2a10 chr4: 28707122-28707180 [+] UCSC Ensembl
Mir-430-o1d7 chr4: 28707328-28707386 [+] UCSC Ensembl
Mir-430-o3a10 chr4: 28707465-28707523 [+] UCSC Ensembl
Mir-430-o2a9 chr4: 28707712-28707770 [+] UCSC Ensembl
Mir-430-o1b5 chr4: 28708442-28708500 [+] UCSC Ensembl
Mir-430-o3a9 chr4: 28708601-28708659 [+] UCSC Ensembl
Mir-430-o2c3 chr4: 28708862-28708920 [+] UCSC Ensembl
Mir-430-o1d6 chr4: 28709068-28709126 [+] UCSC Ensembl
Mir-430-o3a8 chr4: 28709205-28709263 [+] UCSC Ensembl
Mir-430-o2a8 chr4: 28709466-28709524 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUAGUCUGCCACCAUUGUCUCUAUCGGUACCCUCACAAAAGCACUGACUUUGAUGCUGUAAUUGGUAAGUGCUAUUUGUUGGGGUAGUUUCAAGUGACCUGUGCUACAAGAGAAUGU

Get precursor sequence

Structure

        10         20         30        40         50        
UUUUAGUCUGCCACCAUU-   U  AUCGG-      C     -|     G   UUGAUG 
                   GUC CU      UACCCU ACAAA AGCACU ACU      C
                   CAG GA      AUGGGG UGUUU UCGUGA UGG      U
UGUAAGAGAACAUCGUGUC   U  ACUUUG      U     A^     A   UUAAUG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-430-o1c_5p*

mirBase accession

MIMAT0031996

Sequence

0- ACCCUCACAAAAGCACUGACU -21

Get sequence

Mature sequence

Dre-Mir-430-o1c_3p

mirBase accession

MIMAT0001423

Sequence

37- UAAGUGCUAUUUGUUGGGGUAG -59

Get sequence

Proposed targets

TargetScanFish: dre-miR-430a