Mir-430-P1

MirGeneDB ID

Cfa-Mir-430-P1

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-302b

Paralogues

Cfa-Mir-430-P2 Cfa-Mir-430-P3 Cfa-Mir-430-P4 Cfa-Mir-430-P5d1 Cfa-Mir-430-P5d2 Cfa-Mir-430-P7d1 Cfa-Mir-430-P7d2

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Eca-Mir-430-P1 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr32: 32429504-32429565 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P1)

Mir-92-P2a chr32: 32428908-32428967 [-] UCSC Ensembl
Mir-430-P4 chr32: 32429036-32429096 [-] UCSC Ensembl
Mir-430-P3 chr32: 32429212-32429272 [-] UCSC Ensembl
Mir-430-P2 chr32: 32429369-32429428 [-] UCSC Ensembl
Mir-430-P1 chr32: 32429504-32429565 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCCCUCAAGUGGAUUGGACUCCCUUUAACUUUAACAUGGAAGUACUUUCUUUGACUUUCAAAAUAGUAAGUGCUUCCAUGUUUUAGUAGAAGUGAACCCAAAUUAUUCCUCCGAAUGUA

Get precursor sequence

Structure

        10          20        30        40        50        60
CCACCCCUCAAGUGGAU--|  AC  C    A   UU               U  UUGACU 
                   UGG  UC CUUU ACU  AACAUGGAAGUACUU CU      U
                   ACC  AG GAAG UGA  UUGUACCUUCGUGAA GA      U
AUGUAAGCCUCCUUAUUAA^  CA  U    A   UU               U  UAAAAC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-430-P1_5p* (predicted)

mirBase accession

MIMAT0009856

Sequence

0- ACUUUAACAUGGAAGUACUUUCU -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-302b
miRDB: MIMAT0009856

Mature sequence

Cfa-Mir-430-P1_3p

mirBase accession

None

Sequence

39- UAAGUGCUUCCAUGUUUUAGUAG -62

Get sequence