MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-430-P1

Family name MIR-430 (all species)
Seed AAGUGCU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-302b
Paralogues Cfa-Mir-430-P2  Cfa-Mir-430-P3  Cfa-Mir-430-P4  Cfa-Mir-430-P5d1  Cfa-Mir-430-P5d2  Cfa-Mir-430-P7d1  Cfa-Mir-430-P7d2 
Orthologues Aca-Mir-430-P1  Ami-Mir-430-P1  Bta-Mir-430-P1  Cli-Mir-430-P1  Cmi-Mir-430-P1  Cpi-Mir-430-P1  Cpo-Mir-430-P1  Dno-Mir-430-P1  Dre-Mir-430-o1a  Dre-Mir-430-o1b1  Dre-Mir-430-o1b2  Dre-Mir-430-o1b3  Dre-Mir-430-o1b4  Dre-Mir-430-o1b5  Dre-Mir-430-o1b6  Dre-Mir-430-o1b7  Dre-Mir-430-o1b8  Dre-Mir-430-o1c  Dre-Mir-430-o1d1  Dre-Mir-430-o1d2  Dre-Mir-430-o1d3  Dre-Mir-430-o1d4  Dre-Mir-430-o1d5  Dre-Mir-430-o1d6  Dre-Mir-430-o1d7  Dre-Mir-430-o1e1  Dre-Mir-430-o1e2  Dre-Mir-430-o1e3  Ete-Mir-430-P1  Gga-Mir-430-P1  Hsa-Mir-430-P1  Mdo-Mir-430-P1  Mml-Mir-430-P1  Mmu-Mir-430-P1  Mun-Mir-430-P1  Oan-Mir-430-P1  Ocu-Mir-430-P1  Rno-Mir-430-P1  Sha-Mir-430-P1  Spt-Mir-430-P1  Sto-Mir-430-P1  Tgu-Mir-430-P1  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xtr-Mir-430-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr32: 32429504-32429565 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P1)
Mir-92-P2a chr32: 32428908-32428967 [-] UCSC Ensembl
Mir-430-P4 chr32: 32429036-32429096 [-] UCSC Ensembl
Mir-430-P3 chr32: 32429212-32429272 [-] UCSC Ensembl
Mir-430-P2 chr32: 32429369-32429428 [-] UCSC Ensembl
Mir-430-P1 chr32: 32429504-32429565 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCCCUCAAGUGGAUUGGACUCCCUUUAACUUUAACAUGGAAGUACUUUCUUUGACUUUCAAAAUAGUAAGUGCUUCCAUGUUUUAGUAGAAGUGAACCCAAAUUAUUCCUCCGAAUGUA
Get precursor sequence
Structure
        10          20        30        40        50        60
CCACCCCUCAAGUGGAU--|  AC  C    A   UU               U  UUGACU 
                   UGG  UC CUUU ACU  AACAUGGAAGUACUU CU      U
                   ACC  AG GAAG UGA  UUGUACCUUCGUGAA GA      U
AUGUAAGCCUCCUUAUUAA^  CA  U    A   UU               U  UAAAAC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-430-P1_5p* (predicted)

mirBase accessionMIMAT0009856
Sequence
0- ACUUUAACAUGGAAGUACUUUCU -23
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Proposed targets TargetScanVert: cfa-miR-302b
miRDB: MIMAT0009856
Mature sequence

Cfa-Mir-430-P1_3p

mirBase accessionNone
Sequence
39- UAAGUGCUUCCAUGUUUUAGUAG -62
Get sequence