MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-430-P4

Family name MIR-430 (all species)
Seed AAGUGCU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-302d
Paralogues Cfa-Mir-430-P1  Cfa-Mir-430-P2  Cfa-Mir-430-P3  Cfa-Mir-430-P5d1  Cfa-Mir-430-P5d2  Cfa-Mir-430-P7d1  Cfa-Mir-430-P7d2 
Orthologues Ami-Mir-430-P4  Bta-Mir-430-P4  Cja-Mir-430-P4  Cli-Mir-430-P4  Cmi-Mir-430-P4  Cpi-Mir-430-P4  Cpo-Mir-430-P4  Dno-Mir-430-P4  Eca-Mir-430-P4  Ete-Mir-430-P4  Gga-Mir-430-P4  Hsa-Mir-430-P4  Laf-Mir-430-P4  Mdo-Mir-430-P4  Mml-Mir-430-P4  Mmr-Mir-430-P4  Mmu-Mir-430-P4  Oan-Mir-430-P4  Ocu-Mir-430-P4  Pab-Mir-430-P4  Rno-Mir-430-P4  Spt-Mir-430-P4  Sto-Mir-430-P4  Tgu-Mir-430-P4  Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xtr-Mir-430-o4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr32: 32429036-32429096 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P4)
Mir-92-P2a chr32: 32428908-32428967 [-] UCSC Ensembl
Mir-430-P4 chr32: 32429036-32429096 [-] UCSC Ensembl
Mir-430-P3 chr32: 32429212-32429272 [-] UCSC Ensembl
Mir-430-P2 chr32: 32429369-32429428 [-] UCSC Ensembl
Mir-430-P1 chr32: 32429504-32429565 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUUUUGAGUCUAUAAGGAACGCCCUCUACUUUAACAUGGAGGCACUUGCUGUGACAUGAUAAAAAUAAGUGCUUCCAUGUUUUAGUGUGGUGGUUCCUUUUUAAUCCUCAGUCAUCCU
Get precursor sequence
Structure
        10           20        30        40        50          
AUUUUUUUGAGUCUAUA---|     GC  UC    UU                CUGUGACA 
                    AGGAAC  CC  UACU  AACAUGGAGGCACUUG        \
                    UCCUUG  GG  GUGA  UUGUACCUUCGUGAAU        U
UCCUACUGACUCCUAAUUUU^     GU  U-    UU                AAAAAUAG 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-430-P4_5p* (predicted)

mirBase accessionMIMAT0009858
Sequence
0- ACUUUAACAUGGAGGCACUUGCU -23
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Proposed targets TargetScanVert: cfa-miR-302d
miRDB: MIMAT0009858
Mature sequence

Cfa-Mir-430-P4_3p

mirBase accessionNone
Sequence
38- UAAGUGCUUCCAUGUUUUAGUGU -61
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