MirGeneDB ID | Cfa-Mir-430-P7d1 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
Cfa-Mir-430-P1
Cfa-Mir-430-P2
Cfa-Mir-430-P3
Cfa-Mir-430-P4
Cfa-Mir-430-P5d1
Cfa-Mir-430-P5d2
Cfa-Mir-430-P7d2
|
Orthologues |
Bta-Mir-430-P7
Cja-Mir-430-P7
Eca-Mir-430-P7
Hsa-Mir-430-P7
Laf-Mir-430-P7
Mml-Mir-430-P7
Mmr-Mir-430-P7
Pab-Mir-430-P7
Xtr-Mir-430-o7
|
Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
Vertebrata
|
Genome context (canFam3_add) |
chr1: 103606026-103606080 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCAGGAGCAGAUUCCGCUCAGACUGGGAUACACAAAAUGAGGGCACUUCCCGAUCUGUCUGGAAAGUGCUCCCACUUUGUGUGUCCUUGUCUGAGGAAAGCAUCCUUGUCCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCAGGAGCAGAUUCCG--| U A A C GAUC
CUCAGAC GGGAUACACAAA UG GGGCACUU CC \
GAGUCUG UCCUGUGUGUUU AC CUCGUGAA GG U
CACCCUGUUCCUACGAAAG^ U C C A UCUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Star sequence |
Cfa-Mir-430-P7d1_5p* |
mirBase accession | None |
Sequence |
0- ACACAAAAUGAGGGCACUUCCC -22
Get sequence
|
Mature sequence |
Cfa-Mir-430-P7d1_3p |
mirBase accession | None |
Sequence |
33- AAAGUGCUCCCACUUUGUGUGU -55
Get sequence
|