Mir-430-P2

MirGeneDB ID

Cfa-Mir-430-P2

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-302c

Paralogues

Cfa-Mir-430-P1 Cfa-Mir-430-P3 Cfa-Mir-430-P4 Cfa-Mir-430-P5d1 Cfa-Mir-430-P5d2 Cfa-Mir-430-P7d1 Cfa-Mir-430-P7d2

Orthologues

Ami-Mir-430-P2 Bta-Mir-430-P2 Cja-Mir-430-P2 Cli-Mir-430-P2 Cmi-Mir-430-P2 Cpi-Mir-430-P2 Cpo-Mir-430-P2 Dno-Mir-430-P2 Dre-Mir-430-o2a1 Dre-Mir-430-o2a2 Dre-Mir-430-o2a3 Dre-Mir-430-o2a4 Dre-Mir-430-o2a5 Dre-Mir-430-o2a6 Dre-Mir-430-o2a7 Dre-Mir-430-o2a8 Dre-Mir-430-o2a9 Dre-Mir-430-o2a10 Dre-Mir-430-o2a11 Dre-Mir-430-o2a12 Dre-Mir-430-o2a13 Dre-Mir-430-o2a14 Dre-Mir-430-o2b Dre-Mir-430-o2c1 Dre-Mir-430-o2c2 Dre-Mir-430-o2c3 Dre-Mir-430-o2d1 Dre-Mir-430-o2d2 Eca-Mir-430-P2 Ete-Mir-430-P2 Gga-Mir-430-P2 Hsa-Mir-430-P2 Laf-Mir-430-P2 Mdo-Mir-430-P2 Mml-Mir-430-P2 Mmr-Mir-430-P2 Mmu-Mir-430-P2 Neu-Mir-430-P2 Oan-Mir-430-P2 Ocu-Mir-430-P2 Pab-Mir-430-P2 Sha-Mir-430-P2 Spt-Mir-430-P2 Sto-Mir-430-P2 Tgu-Mir-430-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr32: 32429369-32429428 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P2)

Mir-92-P2a chr32: 32428908-32428967 [-] UCSC Ensembl
Mir-430-P4 chr32: 32429036-32429096 [-] UCSC Ensembl
Mir-430-P3 chr32: 32429212-32429272 [-] UCSC Ensembl
Mir-430-P2 chr32: 32429369-32429428 [-] UCSC Ensembl
Mir-430-P1 chr32: 32429504-32429565 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAUUUUAGAGCCCCGAGGGAUUCCCCUUUGCUUUAACAUGGGGGUACCUGCUGUGUAAAACAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGGUGUCUCCAAGUGGACACGACUUAAUUU

Get precursor sequence

Structure

        10            20        30        40        50         
UAAUUUUAGAGCCCCGA---  -|  UCC    UG  UU             C    GUGUA 
                    GG GAU   CCUU  CU  AACAUGGGGGUAC UGCU     A
                    CC CUG   GGAG  GA  UUGUACCUUCGUG AUGA     A
UUUAAUUCAGCACAGGUGAA  U^  U--    GU  CU             A    AAACA 
.       110       100          90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-430-P2_5p* (predicted)

mirBase accession

MIMAT0009857

Sequence

0- GCUUUAACAUGGGGGUACCUGCU -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-302c
miRDB: MIMAT0009857

Mature sequence

Cfa-Mir-430-P2_3p (predicted)

mirBase accession

None

Sequence

37- UAAGUGCUUCCAUGUUUCAGUGG -60

Get sequence