MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-430-P2

Family name MIR-430 (all species)
Seed AAGUGCU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-302c
Paralogues Ami-Mir-430-P1  Ami-Mir-430-P3  Ami-Mir-430-P4 
Orthologues Bta-Mir-430-P2  Cfa-Mir-430-P2  Cja-Mir-430-P2  Cli-Mir-430-P2  Cmi-Mir-430-P2  Cpi-Mir-430-P2  Cpo-Mir-430-P2  Dno-Mir-430-P2  Dre-Mir-430-o2a1  Dre-Mir-430-o2a2  Dre-Mir-430-o2a3  Dre-Mir-430-o2a4  Dre-Mir-430-o2a5  Dre-Mir-430-o2a6  Dre-Mir-430-o2a7  Dre-Mir-430-o2a8  Dre-Mir-430-o2a9  Dre-Mir-430-o2a10  Dre-Mir-430-o2a11  Dre-Mir-430-o2a12  Dre-Mir-430-o2a13  Dre-Mir-430-o2a14  Dre-Mir-430-o2b  Dre-Mir-430-o2c1  Dre-Mir-430-o2c2  Dre-Mir-430-o2c3  Dre-Mir-430-o2d1  Dre-Mir-430-o2d2  Eca-Mir-430-P2  Ete-Mir-430-P2  Gga-Mir-430-P2  Hsa-Mir-430-P2  Laf-Mir-430-P2  Mdo-Mir-430-P2  Mml-Mir-430-P2  Mmr-Mir-430-P2  Mmu-Mir-430-P2  Neu-Mir-430-P2  Oan-Mir-430-P2  Ocu-Mir-430-P2  Pab-Mir-430-P2  Sha-Mir-430-P2  Spt-Mir-430-P2  Sto-Mir-430-P2  Tgu-Mir-430-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713485.1: 213804-213861 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-430-P2)
Mir-430-P1 NW_017713485.1: 213493-213553 [+] UCSC
Mir-430-P2 NW_017713485.1: 213804-213861 [+] UCSC
Mir-430-P3 NW_017713485.1: 214083-214143 [+] UCSC
Mir-430-P4 NW_017713485.1: 214397-214458 [+] UCSC
Mir-92-P2a NW_017713485.1: 214645-214704 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUGGUACUGGUAUUUUAAACAGCCUCCUUUGCUUUAACAUGGAGGUACCUGCUGCCUAAAAAAAGUAAGUGCUUCCAUGUUUCAGUGGUGGUGGUAGUUCCUAAUAUCUAAGACCUGC
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Structure
        10          20        30        40        50        
AUGGUACUGGUAUUUUA--|  A   U  U UG  UU             C    GCCU 
                   AAC GCC CC U  CU  AACAUGGAGGUAC UGCU    A
                   UUG UGG GG G  GA  UUGUACCUUCGUG AUGA    A
CGUCCAGAAUCUAUAAUCC^  A   U  U GU  CU             A    AAAA 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Star sequence

Ami-Mir-430-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUUUAACAUGGAGGUACCUGCU -23
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Mature sequence

Ami-Mir-430-P2_3p (predicted)

mirBase accessionMIMAT0038266
Sequence
35- UAAGUGCUUCCAUGUUUCAGUGG -58
Get sequence