MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-430-P2

Family name MIR-430 (all species)
Seed AAGUGCU
Species Horse (Equus caballus)
MiRBase ID eca-mir-302c
Paralogues Eca-Mir-430-P1  Eca-Mir-430-P3  Eca-Mir-430-P4  Eca-Mir-430-P5  Eca-Mir-430-P6  Eca-Mir-430-P7 
Orthologues Ami-Mir-430-P2  Bta-Mir-430-P2  Cfa-Mir-430-P2  Cja-Mir-430-P2  Cli-Mir-430-P2  Cmi-Mir-430-P2  Cpi-Mir-430-P2  Cpo-Mir-430-P2  Dno-Mir-430-P2  Dre-Mir-430-o2a1  Dre-Mir-430-o2a2  Dre-Mir-430-o2a3  Dre-Mir-430-o2a4  Dre-Mir-430-o2a5  Dre-Mir-430-o2a6  Dre-Mir-430-o2a7  Dre-Mir-430-o2a8  Dre-Mir-430-o2a9  Dre-Mir-430-o2a10  Dre-Mir-430-o2a11  Dre-Mir-430-o2a12  Dre-Mir-430-o2a13  Dre-Mir-430-o2a14  Dre-Mir-430-o2b  Dre-Mir-430-o2c1  Dre-Mir-430-o2c2  Dre-Mir-430-o2c3  Dre-Mir-430-o2d1  Dre-Mir-430-o2d2  Ete-Mir-430-P2  Gga-Mir-430-P2  Hsa-Mir-430-P2  Laf-Mir-430-P2  Mdo-Mir-430-P2  Mml-Mir-430-P2  Mmr-Mir-430-P2  Mmu-Mir-430-P2  Neu-Mir-430-P2  Oan-Mir-430-P2  Ocu-Mir-430-P2  Pab-Mir-430-P2  Sha-Mir-430-P2  Spt-Mir-430-P2  Sto-Mir-430-P2  Tgu-Mir-430-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009149.1: 114120580-114120639 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P2)
Mir-430-P1 CM009149.1: 114120447-114120508 [+] UCSC Ensembl
Mir-430-P2 CM009149.1: 114120580-114120639 [+] UCSC Ensembl
Mir-430-P3 CM009149.1: 114120752-114120812 [+] UCSC Ensembl
Mir-430-P4 CM009149.1: 114120912-114120972 [+] UCSC Ensembl
Mir-92-P2a CM009149.1: 114121041-114121100 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCUAACAGAGGUCAAGGGGAUCCCCUUUGCUUUAACAUGGGGGUACCUGCUGUGUAAAGCAAAAGUAAGUGCUUCCAUGUUUCAGUGGAGGUGUCUCCAAACCGUCACAGUUAUUUUG
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Structure
        10           20        30        40        50         
CGGCUAACAGAGGUCAA---|     CC    UG  UU             C    GUGUA 
                    GGGGAU  CCUU  CU  AACAUGGGGGUAC UGCU     A
                    CCUCUG  GGAG  GA  UUGUACCUUCGUG AUGA     A
GUUUUAUUGACACUGCCAAA^     U-    GU  CU             A    AAACG 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-430-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUUUAACAUGGGGGUACCUGCU -23
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Mature sequence

Eca-Mir-430-P2_3p

mirBase accessionMIMAT0012913
Sequence
37- UAAGUGCUUCCAUGUUUCAGUGG -60
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