Mir-430-P6

MirGeneDB ID

Eca-Mir-430-P6

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-372

Paralogues

Eca-Mir-430-P1 Eca-Mir-430-P2 Eca-Mir-430-P3 Eca-Mir-430-P4 Eca-Mir-430-P5 Eca-Mir-430-P7

Orthologues

Cja-Mir-430-P6 Dno-Mir-430-P6 Hsa-Mir-430-P6 Mml-Mir-430-P6 Mmr-Mir-430-P6 Mmu-Mir-430-P6 Pab-Mir-430-P6 Rno-Mir-430-P6a Rno-Mir-430-P6b Xla-Mir-430-o6a Xla-Mir-430-o6b Xtr-Mir-430-o6

Node of Origin (locus)

Eutheria

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009157.1: 23263034-23263093 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P6)

Mir-430-P5 CM009157.1: 23262827-23262886 [+] UCSC Ensembl
Mir-430-P6 CM009157.1: 23263034-23263093 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUCCCGGGUCAGCUGCUCAGCCUGCGGGACUCAAAUGUGGAAGCACUCUUCGAACAUCGGGAUGGAAAGUGCUGCGACAUUUGAGUGUCGCCGGUGGGCACCCUCCACGGAACCCAAG

Get precursor sequence

Structure

        10           20        30        40        50         
AGGUCCCGGGUCAGCUG---|   G  U    G          GGA      C   GAACA 
                    CUCA CC GCGG ACUCAAAUGU   AGCACU UUC     U
                    GGGU GG CGCU UGAGUUUACA   UCGUGA AGG     C
GAACCCAAGGCACCUCCCAC^   -  C    G          GCG      A   UAGGG 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-430-P6_5p* (predicted)

mirBase accession

None

Sequence

0- ACUCAAAUGUGGAAGCACUCUUC -23

Get sequence

Mature sequence

Eca-Mir-430-P6_3p

mirBase accession

MIMAT0034639

Sequence

37- AAAGUGCUGCGACAUUUGAGUGU -60

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