MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-430-o6a

Family name MIR-430 (all species)
Seed AAGUGCU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xla-Mir-430-o5o1  Xla-Mir-430-o5o2  Xla-Mir-430-o5p1  Xla-Mir-430-o5p2  Xla-Mir-430-o5q1  Xla-Mir-430-o5q2  Xla-Mir-430-o5r  Xla-Mir-430-o5s  Xla-Mir-430-o6b  Xla-Mir-430-o7a  Xla-Mir-430-o7b  Xla-Mir-430-o8a  Xla-Mir-430-o8b  Xla-Mir-430-o9  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xla-Mir-430-P3a  Xla-Mir-430-P3b 
Orthologues Cja-Mir-430-P6  Dno-Mir-430-P6  Eca-Mir-430-P6  Hsa-Mir-430-P6  Mml-Mir-430-P6  Mmr-Mir-430-P6  Mmu-Mir-430-P6  Pab-Mir-430-P6  Rno-Mir-430-P6a  Xtr-Mir-430-o6 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030738.1: 764035-764093 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-o6a)		 Mir-430-o7a NC_030738.1: 764304-764364 [+] UCSC Ensembl
Mir-430-o8a NC_030738.1: 764746-764803 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACUGGGUGCCUAAUCAUUGUCAGCACAGUAGCCAGACUGGGGCCCUCUCUUGUUAUCAGUGGGAGUAAGUGCUUUCUAGUUUGGUUAUUGUGCCAACAAACAAUCCGACGGCUGGAGA
Get precursor sequence
Structure
        10          20        30        40            50       
UACUGGGUGCCUAAUCA--    CA                  --   C  --|  UUGUUA 
                   UUGU  GCACAGUAGCCAGACUGG  GGC CU  CUC      \
                   AACA  CGUGUUAUUGGUUUGAUC  UCG GA  GAG      U
AGAGGUCGGCAGCCUAACA    AC                  UU   U  AU^  GGUGAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-430-o6a_5p*
mirBase accessionNone
Sequence 
0- AGCCAGACUGGGGCCCUCUCU -21
Get sequence
Mature sequence

Xla-Mir-430-o6a_3p
mirBase accessionNone
Sequence 
36- UAAGUGCUUUCUAGUUUGGUUAU -59
Get sequence