MirGeneDB 3.0

MirGeneDB ID

Xla-Mir-430-P3b

Family name MIR-430 (all species)
Seed AAGUGCU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xla-Mir-430-o5o1  Xla-Mir-430-o5o2  Xla-Mir-430-o5p1  Xla-Mir-430-o5p2  Xla-Mir-430-o5q1  Xla-Mir-430-o5q2  Xla-Mir-430-o5r  Xla-Mir-430-o5s  Xla-Mir-430-o6a  Xla-Mir-430-o6b  Xla-Mir-430-o7a  Xla-Mir-430-o7b  Xla-Mir-430-o8a  Xla-Mir-430-o8b  Xla-Mir-430-o9  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xla-Mir-430-P3a 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cja-Mir-430-P3  Cli-Mir-430-P3  Cmi-Mir-430-P3  Cpi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Eca-Mir-430-P3  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Laf-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmr-Mir-430-P3  Mmu-Mir-430-P3  Neu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Pab-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xtr-Mir-430-P3 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030725.1: 56777932-56777991 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGUCAACUGUAAUCAAGGAUCUCCUUACACUUAAACAUUGAGGGACUUUUUCCCAUGUACUGCCGUAAGUGCUUCAAUGUUUUGGUGAAAGAGGGUCCAAGCCACCCAAUGCUGAACU
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Structure
        10          20        30        40        50         
UCAGUCAACUGUAAUCAA--|    UC   A    U           G    UUUCCCAU 
                    GGAUC  CUU CACU AAACAUUGAGG ACUU        G
                    CCUGG  GAA GUGG UUUGUAACUUC UGAA        U
UCAAGUCGUAACCCACCGAA^    GA   A    U           G    UGCCGUCA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Em
Star sequence

Xla-Mir-430-P3b_5p*

mirBase accessionNone
Sequence
0- ACUUAAACAUUGAGGGACUUUUU -23
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Mature sequence

Xla-Mir-430-P3b_3p

mirBase accessionNone
Sequence
37- UAAGUGCUUCAAUGUUUUGGUGA -60
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