MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-302a
Paralogues Cli-Mir-430-P1  Cli-Mir-430-P2  Cli-Mir-430-P4 
Orthologues Aca-Mir-430-P3  Ami-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cmi-Mir-430-P3  Cpi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold942: 1626451-1626510 [+]
Clustered miRNAs
(< 50kb from Mir-430-P3)
Mir-430-P1 scaffold942: 1626026-1626086 [+]
Mir-430-P2 scaffold942: 1626310-1626366 [+]
Mir-430-P3 scaffold942: 1626451-1626510 [+]
Mir-430-P4 scaffold942: 1626806-1626867 [+]
Mir-92-P2a scaffold942: 1626979-1627038 [+]
Precursor
(pre-Mir +30nt flank)
ACUGCAUGUAUCUGCUUAAGGACCCCCAUAACUUAAAUGUGGAUGUACUUGCUUUGUUCCUGAAAAGUAAGUGCUUCCAUGUUUUGGUGAUGGUGAAUCCUUUUUUCCCCCUCAUCUGAA
Get precursor sequence
Structure
        10         20         30        40        50         
ACUGCAUGUAUCUGCUU-     CCC-|   A   U         U         UUGUU 
                  AAGGA    CCAU ACU AAAUGUGGA GUACUUGCU     C
                  UUCCU    GGUA UGG UUUGUACCU CGUGAAUGA     C
AAGUCUACUCCCCCUUUU     AAGU^   G   U         U         AAAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-430-P3_5p*

mirBase accessionNone
Sequence
0- ACUUAAAUGUGGAUGUACUUGCU -23
Get sequence
Mature sequence

Cli-Mir-430-P3_3p

mirBase accessionMIMAT0038615
Sequence
37- UAAGUGCUUCCAUGUUUUGGUGA -60
Get sequence