MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-430-P4

Family name MIR-430 (all species)
Seed AAGUGCU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-302b-2
Paralogues Cli-Mir-430-P1  Cli-Mir-430-P2  Cli-Mir-430-P3 
Orthologues Ami-Mir-430-P4  Bta-Mir-430-P4  Cfa-Mir-430-P4  Cmi-Mir-430-P4  Cpi-Mir-430-P4  Cpo-Mir-430-P4  Dno-Mir-430-P4  Ete-Mir-430-P4  Gga-Mir-430-P4  Hsa-Mir-430-P4  Mdo-Mir-430-P4  Mml-Mir-430-P4  Mmu-Mir-430-P4  Oan-Mir-430-P4  Ocu-Mir-430-P4  Rno-Mir-430-P4  Spt-Mir-430-P4  Sto-Mir-430-P4  Tgu-Mir-430-P4  Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xtr-Mir-430-o4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold942: 1626806-1626867 [+]
Clustered miRNAs
(< 50kb from Mir-430-P4)
Mir-430-P1 scaffold942: 1626026-1626086 [+]
Mir-430-P2 scaffold942: 1626310-1626366 [+]
Mir-430-P3 scaffold942: 1626451-1626510 [+]
Mir-430-P4 scaffold942: 1626806-1626867 [+]
Mir-92-P2a scaffold942: 1626979-1627038 [+]
Precursor
(pre-Mir +30nt flank)
ACAAGCACAAGAGGUGAGAGGACCCCCUCUACUUUAACAUGGGAGGUACUUGCUGGAUGCCUAAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGGUGACUCCUAAAAGCUCAAUUCAUUUAU
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Structure
        10         20         30        40        50        60 
ACAAGCACAAGAGGUGAG-    CCC-| UCU   UU       G          UGGAUGC 
                   AGGA    CC   ACU  AACAUGG AGGUACUUGC       \
                   UCCU    GG   UGA  UUGUACC UUCGUGAAUG       C
UAUUUACUUAACUCGAAAA    CAGU^ UGU   UU       -          AAAAAAU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-430-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAACAUGGGAGGUACUUGC -23
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Mature sequence

Cli-Mir-430-P4_3p

mirBase accessionMIMAT0038616
Sequence
39- UAAGUGCUUCCAUGUUUUAGUUG -62
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