MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-430-P4

Family name MIR-430 (all species)
Seed AAGUGCU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-302d
Paralogues Ami-Mir-430-P1  Ami-Mir-430-P2  Ami-Mir-430-P3 
Orthologues Bta-Mir-430-P4  Cfa-Mir-430-P4  Cja-Mir-430-P4  Cli-Mir-430-P4  Cmi-Mir-430-P4  Cpi-Mir-430-P4  Cpo-Mir-430-P4  Dno-Mir-430-P4  Eca-Mir-430-P4  Ete-Mir-430-P4  Gga-Mir-430-P4  Hsa-Mir-430-P4  Laf-Mir-430-P4  Mdo-Mir-430-P4  Mml-Mir-430-P4  Mmr-Mir-430-P4  Mmu-Mir-430-P4  Oan-Mir-430-P4  Ocu-Mir-430-P4  Pab-Mir-430-P4  Rno-Mir-430-P4  Spt-Mir-430-P4  Sto-Mir-430-P4  Tgu-Mir-430-P4  Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xtr-Mir-430-o4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713485.1: 214397-214458 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-430-P4)		 Mir-430-P1 NW_017713485.1: 213493-213553 [+] UCSC
Mir-430-P2 NW_017713485.1: 213804-213861 [+] UCSC
Mir-430-P3 NW_017713485.1: 214083-214143 [+] UCSC
Mir-430-P4 NW_017713485.1: 214397-214458 [+] UCSC
Mir-92-P2a NW_017713485.1: 214645-214704 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CACAAGCUUACACUAUAAAGGACCCCCUCUACUUUAACAUGGGAGGUACUUGCUGGAUGCUUGAAAAAGUAAGUGCUUCCAUGUUUUAGUUGUGGUGAAUCCUAAUAACUCCUACAGAAAAU
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Structure
        10         20         30        40        50        60 
CACAAGCUUACACUAUAA-    CCC-| UCU   UU       G          UGGAUGC 
                   AGGA    CC   ACU  AACAUGG AGGUACUUGC       \
                   UCCU    GG   UGA  UUGUACC UUCGUGAAUG       U
UAAAAGACAUCCUCAAUAA    AAGU^ UGU   UU       -          AAAAAGU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-430-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACUUUAACAUGGGAGGUACUUGC -23
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Mature sequence

Ami-Mir-430-P4_3p
mirBase accessionMIMAT0038267
Sequence 
39- UAAGUGCUUCCAUGUUUUAGUUG -62
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