MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-92-P2a

Family name MIR-92 (all species)
Seed AUUGCAC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-367
Paralogues Ami-Mir-92-P1a  Ami-Mir-92-P1c  Ami-Mir-92-P1d  Ami-Mir-92-P2c 
Orthologues Aca-Mir-92-P2a  Asu-Mir-92  Bfl-Mir-92-o2  Bla-Mir-92-o2  Bta-Mir-92-P2a  Cel-Mir-92  Cfa-Mir-92-P2a  Cja-Mir-92-P2a  Cli-Mir-92-P2a  Cmi-Mir-92-P2a  Cpi-Mir-92-P2a  Cpo-Mir-92-P2a  Dno-Mir-92-P2a  Eca-Mir-92-P2a  Esc-Mir-92  Ete-Mir-92-P2a  Gga-Mir-92-P2a  Gja-Mir-92-P2a  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2a  Isc-Mir-92  Laf-Mir-92-P2a  Mdo-Mir-92-P2a  Mml-Mir-92-P2a  Mmr-Mir-92-P2a  Mmu-Mir-92-P2a  Mun-Mir-92-P2a  Neu-Mir-92-P2a  Oan-Mir-92-P2a  Obi-Mir-92  Ocu-Mir-92-P2a  Pab-Mir-92-P2a  Rno-Mir-92-P2a  Sha-Mir-92-P2a  Sme-Mir-92  Spt-Mir-92-P2a  Sto-Mir-92-P2a  Tgu-Mir-92-P2a  Xla-Mir-92-P2a  Xtr-Mir-92-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713485.1: 214645-214704 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-92-P2a)
Mir-430-P1 NW_017713485.1: 213493-213553 [+] UCSC
Mir-430-P2 NW_017713485.1: 213804-213861 [+] UCSC
Mir-430-P3 NW_017713485.1: 214083-214143 [+] UCSC
Mir-430-P4 NW_017713485.1: 214397-214458 [+] UCSC
Mir-92-P2a NW_017713485.1: 214645-214704 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAAAUUCUAUAUCUUCAACUACAGGCUGCUACUGUUGCUAAUAUGCAACUCUGUUAUGUCAAAAUUGGAAUUGCACUUUAGCAAUGGUGAUGGACUGUAAGACACACAAGGACAGAAACU
Get precursor sequence
Structure
        10          20        30        40        50         
AAAAUUCUAUAUCUUCAAC--|    G  GC            UA     C   GUUAUG 
                     UACAG CU  UACUGUUGCUAA  UGCAA UCU      U
                     AUGUC GG  GUGGUAACGAUU  ACGUU AGG      C
UCAAAGACAGGAACACACAGA^    A  UA            UC     A   UUAAAA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Star sequence

Ami-Mir-92-P2a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUGUUGCUAAUAUGCAACUCU -22
Get sequence
Mature sequence

Ami-Mir-92-P2a_3p (predicted)

mirBase accessionMIMAT0038274
Sequence
38- AAUUGCACUUUAGCAAUGGUGA -60
Get sequence